Browse Element(s) Details


Os.53218.1.S1_at

Description gb:AK071432.1
DB_XREF= gi:32981455
TID=Os.53218.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53218 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092D01, full insert sequence.
FL= gb:AK071432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4290011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53218.1.S1_at--968--8511Chr04:25163191..25163215 (25 bp)
TGGAACTCAGGAGGGAGATGCCACA
LOC_Os04g42900
Os.53218.1.S1_at--763--9191Chr04:25163173..25163197 (25 bp)
TGCCACAGGGAGACGGAGCCGATCT
LOC_Os04g42900
Os.53218.1.S1_at--652--5971Chr04:25163164..25163188 (25 bp)
GAGACGGAGCCGATCTTCAACCGGA
LOC_Os04g42900
Os.53218.1.S1_at--1000--2471Chr04:25163059..25163083 (25 bp)
AACATCAGCGCCATGACGGACTACC
LOC_Os04g42900
Os.53218.1.S1_at--510--6531Chr04:25162852..25162876 (25 bp)
GATTTCTCAAAATCTCTTGACAGTT
LOC_Os04g42900
Os.53218.1.S1_at--696--1231Chr04:25162831..25162855 (25 bp)
AGTTGACACACAAGGCACAGGCGAA
LOC_Os04g42900
Os.53218.1.S1_at--1084--2111Chr04:25162787..25162811 (25 bp)
ACATGGTTCATGTTAGAGGTGCACA
LOC_Os04g42900
Os.53218.1.S1_at--292--8171Chr04:25162754..25162778 (25 bp)
GGAAAATCCTGCAGTGAGTAGATCA
LOC_Os04g42900
Os.53218.1.S1_at--394--9731Chr04:25162690..25162714 (25 bp)
TAATTCTTTCCTCCCGGTAGTTCAT
LOC_Os04g42900
Os.53218.1.S1_at--992--9251Chr04:25162682..25162706 (25 bp)
TCCTCCCGGTAGTTCATGTACATAT
LOC_Os04g42900
Os.53218.1.S1_at--873--5911Chr04:25162655..25162679 (25 bp)
GAGCTTAATAACTGATGTACCATCT
LOC_Os04g42900
Target Sequence 
TGGAACTCAGGAGGGAGATGCCACAGGGAGACGGAGCCGATCTTCAACCGGACGCACCTCGCCGAGTACCCGGAGAAGAT
GAGGATCCTGGAGCAGGTGCTGGGGCGGATGAGGACGCCGGTGATCTACCTCAACATCAGCGCCATGACGGACTACCGCA
AGGACGCCCACCCGTCGGTGTACCGGGTGCGGTACGAGACGGAGGAGGAGCGGATGGCGGCGGTGGCGAAGCAGGACTGC
AGCCACTGGTGCCTGCCCGGCGTGCCGGATTCCTGGAACGAGCTGCTGTACGCCTCGCTGCTCCAGGCAGGGAGAGGATC
GTGGAGACTATGAGAAGTTGATTTCTCAAAATCTCTTGACAGTTGACACACAAGGCACAGGCGAAAAAAAAAAGATGAGT
GGTAACATGGTTCATGTTAGAGGTGCACATAAACACAGGAAAATCCTGCAGTGAGTAGATCAGGTAGAAGCAGATTAATC
GTTAATAAGATGATGAGGTTTTAATTCTTTCCTCCCGGTAGTTCATGTACATATGAGAGCTTAATAACTGATGTACCATC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis