Browse Element(s) Details


OsAffx.14246.1.S1_at

Description tigr:9632.m04098
TID=OsAffx.14246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4285010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42800Os.51212.1.S1_at11/114+25121281..25122895expressed protein
LOC_Os04g42810OsAffx.29600.2.S1_s_at11/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42810OsAffx.29600.1.S1_at4/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42820OsAffx.29599.1.S1_s_at11/114+25125796..25126708hypothetical protein
LOC_Os04g42820OsAffx.29599.2.S1_at8/114+25125796..25126708hypothetical protein
LOC_Os04g42830OsAffx.16663.3.S1_x_at11/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_s_at4/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_x_at3/114+25127784..25129225Transferase family protein
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein
LOC_Os04g42860Os.50483.1.S1_at9/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42860OsAffx.31434.2.S1_x_at2/114+25149279..25152935GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g42870Os.6179.1.S1_at11/114+25153397..25155482methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14246.1.S1_at--600--9291Chr04:25146190..25146214 (25 bp)
TCCGCTCCTCATTGGATCGATCGAG
LOC_Os04g42850
OsAffx.14246.1.S1_at--1055--511Chr04:25146175..25146199 (25 bp)
ATCGATCGAGCGACTGGCTGCTAGG
LOC_Os04g42850
OsAffx.14246.1.S1_at--916--9071Chr04:25145877..25146181 (25 bp)
TGCTAGGCTCTTCATGGTGACCGTT
LOC_Os04g42850
OsAffx.14246.1.S1_at--509--2171Chr04:25145832..25145856 (25 bp)
ACACGCACGCGCTATCTGGGCTGAG
LOC_Os04g42850
OsAffx.14246.1.S1_at--1087--8911Chr04:25145811..25145835 (25 bp)
TGAGCCTTCGGCGTGTACGGACATG
LOC_Os04g42850
OsAffx.14246.1.S1_at--370--4411Chr04:25145443..25145467 (25 bp)
GCCACGTGAACAACCATGTCGACTA
LOC_Os04g42850
OsAffx.14246.1.S1_at--1140--371Chr04:25145416..25145440 (25 bp)
ATCACTCTCAAAGCAGTTTCTTGTG
LOC_Os04g42850
OsAffx.14246.1.S1_at--580--3131NONE
AATTTTACAGCTGAGTGCTCCCTGT
NONE
OsAffx.14246.1.S1_at--119--5071Chr04:25144444..25144468 (25 bp)
GCACGTCGCTTGATGGGACCCGAGA
LOC_Os04g42850
OsAffx.14246.1.S1_at--1132--4611Chr04:25144416..25144440 (25 bp)
GCGAGGAGGTCTTACAGCAGGCAAT
LOC_Os04g42850
OsAffx.14246.1.S1_at--1093--5631Chr04:25144389..25144413 (25 bp)
GACAGATCACTGAGTTGGTCCTCCT
LOC_Os04g42850
Target Sequence 
TCCGCTCCTCATTGGATCGATCGAGCGACTGGCTGCTAGGCTCTTCATGGTGACCGTTCGGCTGTGGGCCGTGACGGGAC
ACGCACGCGCTATCTGGGCTGAGCCTTCGGCGTGTACGGACATGCCGGGTAGCTTATGGGCCGTCCCGCTGCCACGTGAA
CAACCATGTCGACTAAAATCACTCTCAAAGCAGTTTCTTGTGAGTGGTGATATACCCAATTTTACAGCTGAGTGCTCCCT
GTCCGGCTATCGACGCTCCGCACGTCGCTTGATGGGACCCGAGATGCGCGAGGAGGTCTTACAGCAGGCAATCCGACAGA
TCACTGAGTTGGTCCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis