Browse Element(s) Details


Os.51212.1.S1_at

Description gb:AK066402.1
DB_XREF= gi:32976420
TID=Os.51212.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.51212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060A10, full insert sequence.
FL= gb:AK061905.1 gb:AK066402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4280011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42770Os.47741.1.S1_x_at11/114+25095177..25101346expressed protein
LOC_Os04g42770Os.47741.2.S1_at10/114+25095177..25101346expressed protein
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42800Os.51212.1.S1_at11/114+25121281..25122895expressed protein
LOC_Os04g42810OsAffx.29600.2.S1_s_at11/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42810OsAffx.29600.1.S1_at4/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42820OsAffx.29599.1.S1_s_at11/114+25125796..25126708hypothetical protein
LOC_Os04g42820OsAffx.29599.2.S1_at8/114+25125796..25126708hypothetical protein
LOC_Os04g42830OsAffx.16663.3.S1_x_at11/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_s_at4/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_x_at3/114+25127784..25129225Transferase family protein
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51212.1.S1_at--172--2691Chr04:25121936..25121960 (25 bp)
AAGCGGAGGCTCTGGCAGCTCACTC
LOC_Os04g42800
Os.51212.1.S1_at--618--3231Chr04:25121916..25121940 (25 bp)
CACTCCGGTTTACACTTCTGAATGG
LOC_Os04g42800
Os.51212.1.S1_at--73--2751Chr04:25121755..25121779 (25 bp)
AAGAAGCTAGCCAACGTGTCACCTG
LOC_Os04g42800
Os.51212.1.S1_at--637--7771Chr04:25121501..25121525 (25 bp)
GGTGCTTTGAATATTTGACTGATAC
LOC_Os04g42800
Os.51212.1.S1_at--1157--8411Chr04:25121436..25121460 (25 bp)
GGCCGGGTTCGATCTATAGCTTATA
LOC_Os04g42800
Os.51212.1.S1_at--627--8871Chr04:25121388..25121412 (25 bp)
TGATGATTGCTTTAACTTCTGTGGG
LOC_Os04g42800
Os.51212.1.S1_at--281--7911Chr04:25121364..25121388 (25 bp)
GGTTGATTTTGCTTCCTGCATCCCA
LOC_Os04g42800
Os.51212.1.S1_at--670--531Chr04:25121345..25121369 (25 bp)
ATCCCAGCGACATCGCCCAAGTGAA
LOC_Os04g42800
Os.51212.1.S1_at--107--2991Chr04:25121322..25121346 (25 bp)
AATGTGATATGCCATGTGCCCATGT
LOC_Os04g42800
Os.51212.1.S1_at--352--7011Chr04:25121299..25121323 (25 bp)
GTACATGTTGTTTTGCAGCCTACGT
LOC_Os04g42800
Os.51212.1.S1_at--671--5071Chr04:25121285..25121309 (25 bp)
GCAGCCTACGTGACTTGATTATTAA
LOC_Os04g42800
Target Sequence 
AAGCGGAGGCTCTGGCAGCTCACTCCGGTTTACACTTCTGAATGGGCCAAATGGCTAGATGAGCAGAAGAAGCTAGCCAA
CGTGTCACCTGATTCCCCCGTGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTACCCGCCGT
GGCAAGCGTTCGTGGCGCAGCTGCCGCCGGTGAAGGGGATGTGGTCCGGCCTCCTTGATGGGATGGACGGGAGGGTGCTT
TGAATATTTGACTGATACAGACCGTGAAAACATTAGTTGATTGGAGAAAAAAAAGGACGGCCGGGTTCGATCTATAGCTT
ATACTAGAACAAGAACAGGAAGAGTTTGATGATTGCTTTAACTTCTGTGGGGTTGATTTTGCTTCCTGCATCCCAGCGAC
ATCGCCCAAGTGAATGTGATATGCCATGTGCCCATGTACATGTTGTTTTGCAGCCTACGTGACTTGATTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis