Browse Element(s) Details


Os.56294.1.S1_at

Description gb:AK109785.1
DB_XREF= gi:32994994
TID=Os.56294.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C11, full insert sequence.
FL= gb:AK109785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3640011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36380NANA11+20933016..20938724retrotransposon protein, putative, unclassified
LOC_Os11g36390Os.25752.1.S1_at11/1111+20941735..20951593BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g36400Os.56294.1.S1_at11/1111+20961065..20963169expressed protein
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed
LOC_Os11g36430Os.8445.1.S1_at11/1111+20978869..20983802RING-H2 finger protein RHF2a, putative, expressed
LOC_Os11g36440OsAffx.7314.1.S1_at11/1111+20984661..20988746carotenoid isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56294.1.S1_at--119--2131Chr11:20961551..20961575 (25 bp)
ACAGGTCCAAGATGTACGCAGCCGC
LOC_Os11g36400
Os.56294.1.S1_at--303--5871Chr11:20961468..20961492 (25 bp)
GAGCCTTCGTTGCAGTCGTTCATGG
LOC_Os11g36400
Os.56294.1.S1_at--497--791Chr11:20961447..20961471 (25 bp)
ATGGGCGCCTACTGGTACGCAAAGC
LOC_Os11g36400
Os.56294.1.S1_at--888--7211Chr11:20961411..20961435 (25 bp)
GTCGATCGGCGCATCAAGGAGTACC
LOC_Os11g36400
Os.56294.1.S1_at--119--2911Chr11:20961396..20961420 (25 bp)
AAGGAGTACCTCGATCTGTCCTGGG
LOC_Os11g36400
Os.56294.1.S1_at--131--8051Chr11:20961292..20961316 (25 bp)
GGAGTTCAACTCCTTGTTGCAGATA
LOC_Os11g36400
Os.56294.1.S1_at--212--6671Chr11:20961277..20961301 (25 bp)
GTTGCAGATAACCTACCACACGGAG
LOC_Os11g36400
Os.56294.1.S1_at--891--8191Chr11:20961245..20961269 (25 bp)
GGAAGATCAATAGCCCTCAGCTGCG
LOC_Os11g36400
Os.56294.1.S1_at--180--2891Chr11:20961192..20961216 (25 bp)
AAGGTAATCTCTGCTTACCGAGCCT
LOC_Os11g36400
Os.56294.1.S1_at--101--2131Chr11:20961151..20961175 (25 bp)
ACAGGGCGGCCAGTTAGGAACATCA
LOC_Os11g36400
Os.56294.1.S1_at--259--7711Chr11:20961075..20961099 (25 bp)
GGGTGAACCTTTCTTTTCCATATAT
LOC_Os11g36400
Target Sequence 
ACAGGTCCAAGATGTACGCAGCCGCCGGCGGGCGGATGCACATCTTCCTGCTCAACAACGACCACTTCATACTGCAGCAG
GCGGAGCCTTCGTTGCAGTCGTTCATGGGCGCCTACTGGTACGCAAAGCGGAAGCAGCGGGTCGATCGGCGCATCAAGGA
GTACCTCGATCTGTCCTGGGGAAATGTCGTCTCGTGCCTGGGGTACGCAGGGCAGAGCCGCAGGAGGTCGTCGCTTTTCC
GTAGTGTCTCGGCGCTGGTGGAGTTCAACTCCTTGTTGCAGATAACCTACCACACGGAGAAGCTCTGGAAGATCAATAGC
CCTCAGCTGCGAACCGTGCTGCGCAATTCGGTGTGCGGGAAGGTAATCTCTGCTTACCGAGCCTACCTGGAGACTCAGGG
ACAGGGCGGCCAGTTAGGAACATCAGCCACGTATACCCCCGAGGATCTGGAAGATATGTTGCAAAATCTATTCGAAGGGT
GAACCTTTCTTTTCCATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis