Browse Element(s) Details


Os.5676.1.S1_at

Description gb:AK067282.1
DB_XREF= gi:32977300
TID=Os.5676.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.5676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102K12, full insert sequence.
FL= gb:AK067282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3406011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34020Os.15004.1.S1_at11/118+21181776..21184818exostosin family protein, putative, expressed
LOC_Os08g34030OsAffx.17322.1.S1_at11/118+21184788..21185574hypothetical protein
LOC_Os08g34040OsAffx.17323.1.S1_at10/118+21189225..21190083expressed protein
LOC_Os08g34050OsAffx.29501.1.S1_at11/118+21192127..21196463phosphofructokinase family protein, putative, expressed
LOC_Os08g34060Os.5676.1.S2_at11/118+21204797..21221734expressed protein
LOC_Os08g34060Os.5676.1.S1_at11/118+21204797..21221734expressed protein
LOC_Os08g34070Os.15551.1.S1_at10/118+21222562..21227896DCN1-like protein 4, putative, expressed
LOC_Os08g34080Os.53479.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.31069.2.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.17106.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34090OsAffx.20387.1.S1_x_at2/118+21235631..21241630retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5676.1.S1_at--573--6351Chr08:21218117..21218141 (25 bp)
GATGCGTTCCGAGATGCCAGATTTA
LOC_Os08g34060
Os.5676.1.S1_at--1114--9811Chr08:21218330..21218354 (25 bp)
TAACATGCAATTACCTTCGCCAGGA
LOC_Os08g34060
Os.5676.1.S1_at--758--3631Chr08:21218344..21218367 (24 bp)
CTTCGCCAGGATAACTTTCTAGAGA
LOC_Os08g34060
Os.5676.1.S1_at--598--31Chr08:21218635..21218659 (25 bp)
ATTGGTTCTTCATCCGTTGCACGGA
LOC_Os08g34060
Os.5676.1.S1_at--4--4951Chr08:21218660..21218684 (25 bp)
GCATTATTGGTCTAGTCCTGGGATA
LOC_Os08g34060
Os.5676.1.S1_at--135--2131Chr08:21218689..21218713 (25 bp)
ACAGGCCTTGTTGTTGATCTTGCTA
LOC_Os08g34060
Os.5676.1.S1_at--749--1371Chr08:21219601..21219625 (25 bp)
AGAGCTGCCTGAATACATTCTTGGC
LOC_Os08g34060
Os.5676.1.S1_at--583--3611Chr08:21219620..21219644 (25 bp)
CTTGGCACAGTTCGCCTAAATCGTG
LOC_Os08g34060
Os.5676.1.S1_at--159--5031Chr08:21219659..21219683 (25 bp)
GCAGTACCCATCTAAAGTCAGTTCT
LOC_Os08g34060
Os.5676.1.S1_at--947--7111Chr08:21219675..21219699 (25 bp)
GTCAGTTCTATATTTCTTGGCTCAA
LOC_Os08g34060
Os.5676.1.S1_at--1054--10851Chr08:21219691..21219715 (25 bp)
TTGGCTCAATTATCCTTTTCTCCCA
LOC_Os08g34060
Target Sequence 
GATGCGTTCCGAGATGCCAGATTTAAACTTATACCAAGCATTGTTGAGGGTTATTGGATGGTAAAACGTGCAGTTGGAAC
AAAAGCTTGTCTTCTGGGAAAAGCAGTAACATGCAATTACCTTCGCCAGGATAACTTTCTAGAGATAGATGTTGACATTG
GTTCTTCATCCGTTGCACGGAGCATTATTGGTCTAGTCCTGGGATATGTCACAGGCCTTGTTGTTGATCTTGCTATTCTA
ATTGAGGCAAAGGAAGAGAAAGAGCTGCCTGAATACATTCTTGGCACAGTTCGCCTAAATCGTGCGAATCCCGACTCTGC
AGTACCCATCTAAAGTCAGTTCTATATTTCTTGGCTCAATTATCCTTTTCTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis