Browse Element(s) Details


Os.5676.1.S2_at

Description gb:CB676449
DB_XREF= gi:29680174
DB_XREF=OSJNEe12L11.r
CLONE=OSJNEe12L11
TID=Os.5676.1
CNT=12
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.5676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102K12, full insert sequence
FL= gb:AK067282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3406011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34020Os.15004.1.S1_at11/118+21181776..21184818exostosin family protein, putative, expressed
LOC_Os08g34030OsAffx.17322.1.S1_at11/118+21184788..21185574hypothetical protein
LOC_Os08g34040OsAffx.17323.1.S1_at10/118+21189225..21190083expressed protein
LOC_Os08g34050OsAffx.29501.1.S1_at11/118+21192127..21196463phosphofructokinase family protein, putative, expressed
LOC_Os08g34060Os.5676.1.S2_at11/118+21204797..21221734expressed protein
LOC_Os08g34060Os.5676.1.S1_at11/118+21204797..21221734expressed protein
LOC_Os08g34070Os.15551.1.S1_at10/118+21222562..21227896DCN1-like protein 4, putative, expressed
LOC_Os08g34080Os.53479.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.31069.2.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.17106.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34090OsAffx.20387.1.S1_x_at2/118+21235631..21241630retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5676.1.S2_at--751--2451Chr08:21220082..21220106 (25 bp)
AACAAAGTTGGCTGGTCCACTCGGC
LOC_Os08g34060
Os.5676.1.S2_at--791--531Chr08:21220117..21220141 (25 bp)
ATCCCAACTGGATACGTGTTCACGT
LOC_Os08g34060
Os.5676.1.S2_at--395--6531Chr08:21221335..21221359 (25 bp)
GATTTGCACGGTTCAACAGTCATAG
LOC_Os08g34060
Os.5676.1.S2_at--12--2492Chr08:21221361..21221385 (25 bp)
AACAGTGAGAGTGCGGTGGACCTTT
LOC_Os08g34060
Os.5676.1.S2_at--126--7432Chr10:6742076..6742100 (25 bp)
GTGGACCTTTATCTGGAGTGACTAC
NONE
Os.5676.1.S2_at--874--6091Chr08:21221513..21221537 (25 bp)
GAGTCTGCATAGGTATTTCTTTCTG
LOC_Os08g34060
Os.5676.1.S2_at--1147--6132Chr10:6742254..6742278 (25 bp)
GAGGTGTAATTAGCCCTTTCTTGTA
NONE
Os.5676.1.S2_at--572--7691Chr08:21221583..21221607 (25 bp)
GGGTATGTCAATGTTTCCTTCCAAT
LOC_Os08g34060
Os.5676.1.S2_at--1074--9231Chr08:21221598..21221622 (25 bp)
TCCTTCCAATTTTCAGTTTTCTCAC
LOC_Os08g34060
Os.5676.1.S2_at--228--8592Chr10:6742325..6742349 (25 bp)
TGGTTTCCTCTTTGAGATTTCGTCC
NONE
Os.5676.1.S2_at--467--191Chr08:21221639..21221663 (25 bp)
ATTTCGTCCTCCTTTGTACATATAC
LOC_Os08g34060
Target Sequence 
AACAAAGTTGGCTGGTCCACTCGGCAACGTGGCGTATCCCAACTGGATACGTGTTCACGTCTGAAAGGAAGTCAAGATTG
AAATTCGTTTCAAGATATTTATTTACCAACTGATTTGCACGGTTCAACAGTCATAGAAACAGTGAGAGTGCGGTGGACCT
TTATCTGGAGTGACTACCTAGTACAACAGAAAAACATATCTTACCTACAAACACATACATGGAGGCAAATGCAAATTCTT
TGCTTGGTTGACCATCAGAAGAAAAGGCAAATGCATAATCTGACGAAGGGAGTCTGCATAGGTATTTCTTTCTGTTGCAT
ACTGAATTGAGGTGTAATTAGCCCTTTCTTGTAATTTAGGGGTATGTCAATGTTTCCTTCCAATTTTCAGTTTTCTCACT
GGTTTCCTCTTTGAGATTTCGTCCTCCTTTGTACATATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5676.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis