Browse Element(s) Details


Os.57025.1.S1_at

Description gb:AK110764.1
DB_XREF= gi:32995973
TID=Os.57025.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-A02, full insert sequence.
FL= gb:AK110764.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4382011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43810Os.19229.1.S1_a_at10/113+24498759..24503742Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g43814Os.54774.1.S1_x_at1/113+24511161..24511790retrotransposon, putative, centromere-specific
LOC_Os03g43820Os.57025.1.S1_at11/113+24519125..24519925pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g43830OsAffx.13333.1.S1_at11/113+24521452..24522012hypothetical protein
LOC_Os03g43840Os.48042.1.S1_at11/113+24528744..24533424zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57025.1.S1_at--491--1431Chr03:24519666..24519690 (25 bp)
AGAACTACCGGAACTCTGCTTCGAC
LOC_Os03g43820
Os.57025.1.S1_at--999--2431Chr03:24519600..24519624 (25 bp)
AAAAGTTGCTCGAGCTAGCGCGGCC
LOC_Os03g43820
Os.57025.1.S1_at--28--7391Chr03:24519485..24519509 (25 bp)
GTGATGCTGCTGTCCGACTGTGTGC
LOC_Os03g43820
Os.57025.1.S1_at--283--8131Chr03:24519459..24519483 (25 bp)
GGACTTCGACGCGACTTACATGTTC
LOC_Os03g43820
Os.57025.1.S1_at--694--5991Chr03:24519428..24519452 (25 bp)
GAGACGTTGGCTAGGATCGACTTCC
LOC_Os03g43820
Os.57025.1.S1_at--569--5931Chr03:24519380..24519404 (25 bp)
GAGCAGCGTGCCTCGGATAAGTTGA
LOC_Os03g43820
Os.57025.1.S1_at--445--1371Chr03:24519356..24519380 (25 bp)
AGAGCGAATGTGTGGCTTACCTCCG
LOC_Os03g43820
Os.57025.1.S1_at--1077--10451Chr03:24519340..24519364 (25 bp)
TTACCTCCGCGATGGATAGTGGCGT
LOC_Os03g43820
Os.57025.1.S1_at--573--4851Chr03:24519224..24519248 (25 bp)
GCTACTCAGTACATGTCGATTGCCC
LOC_Os03g43820
Os.57025.1.S1_at--551--6591Chr03:24519207..24519231 (25 bp)
GATTGCCCTGGAACTTCTCGTGAAT
LOC_Os03g43820
Os.57025.1.S1_at--1024--9671Chr03:24519178..24519202 (25 bp)
TCACTACCTAATCCATGTCTTTATC
LOC_Os03g43820
Target Sequence 
AGAACTACCGGAACTCTGCTTCGACATTCTCCTCCCGTACGCCAGCTCCTTCAATGGCAGCCAAGGAAAAGTTGCTCGAG
CTAGCGCGGCCATCGCTATCGAGCGACACCGGGGCCTCCTCGACGAGCTCCGCGGCTTGAAGCCCGGCCCCGGCGACGTG
GGCGCCGAGCGCCGCATGCTTGTGATGCTGCTGTCCGACTGTGTGCGGGACTTCGACGCGACTTACATGTTCGCCGACGA
GACGTTGGCTAGGATCGACTTCCTCGTGTCCGGCAGAGGAAGCGAGGAGCAGCGTGCCTCGGATAAGTTGAGAGCGAATG
TGTGGCTTACCTCCGCGATGGATAGTGGCGTGTCATGCACGGACTGGTTTAACGAGGAAGGAAGCCATGGCCGCCCCGCC
TCGTCGCCCGTGGGGAAGAAGGTGATTGCTGGCTGCGCGACCGCTACTCAGTACATGTCGATTGCCCTGGAACTTCTCGT
GAATTGCATCACTACCTAATCCATGTCTTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis