Browse Element(s) Details


Os.57201.1.S1_at

Description gb:AK111131.1
DB_XREF= gi:32996340
TID=Os.57201.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D02, full insert sequence.
FL= gb:AK111131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2200011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21990NANA6+12716547..12720183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22000Os.57201.1.S1_at11/116+12738038..12738486expressed protein
LOC_Os06g22010OsAffx.32229.1.S1_x_at11/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.23041.1.S1_at10/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.26050.13.S1_x_at8/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.9230.1.S1_x_at1/116+12743082..12746423NAD, putative
LOC_Os06g22020OsAffx.15546.1.S1_at11/116+12750746..12752287Cytochrome P450 71C4, putative
LOC_Os06g22030Os.16446.1.S1_at11/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22030Os.40082.1.A1_x_at2/116+12757543..12762701AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57201.1.S1_at--613--1711Chr06:12738430..12738454 (25 bp)
ACCACCGACACGCAAGGAGCAGAAG
LOC_Os06g22000
Os.57201.1.S1_at--738--8511Chr06:12738398..12738422 (25 bp)
TGGCAATGCTCTCGTAGATCCGTCG
LOC_Os06g22000
Os.57201.1.S1_at--655--4811Chr06:12738391..12738415 (25 bp)
GCTCTCGTAGATCCGTCGATGGGAT
LOC_Os06g22000
Os.57201.1.S1_at--632--8631Chr06:12738372..12738396 (25 bp)
TGGGATGGATCGTAAATACTCAGCT
LOC_Os06g22000
Os.57201.1.S1_at--101--7051Chr06:12738361..12738385 (25 bp)
GTAAATACTCAGCTGTCGATCTCGC
LOC_Os06g22000
Os.57201.1.S1_at--889--1611Chr06:12738351..12738375 (25 bp)
AGCTGTCGATCTCGCTCAAGTAAGG
LOC_Os06g22000
Os.57201.1.S1_at--590--8511Chr06:12738307..12738331 (25 bp)
TGGAATTCAGCGATAGAGAGGCAGC
LOC_Os06g22000
Os.57201.1.S1_at--584--5231Chr06:12738243..12738267 (25 bp)
GAATATCGCCGTGACTCTGATCTGC
LOC_Os06g22000
Os.57201.1.S1_at--347--7791Chr06:12738188..12738212 (25 bp)
GGTGCCATCCCAGCTCGATGGAGAA
LOC_Os06g22000
Os.57201.1.S1_at--331--6171Chr06:12738172..12738196 (25 bp)
GATGGAGAACCCAGGTCGTCGTCCC
LOC_Os06g22000
Os.57201.1.S1_at--1022--9411Chr06:12738145..12738169 (25 bp)
TCGTGAGGCATCTCCGGATCGGCTC
LOC_Os06g22000
Target Sequence 
ACCACCGACACGCAAGGAGCAGAAGAGGATTCTGGCAATGCTCTCGTAGATCCGTCGATGGGATGGATCGTAAATACTCA
GCTGTCGATCTCGCTCAAGTAAGGGGAACTCCGTCGTCGGGGATGGAATTCAGCGATAGAGAGGCAGCGGACGGCGCCAG
GGCAGCCTCAACCGCGTCGGCGGCCCCGAATATCGCCGTGACTCTGATCTGCCGCTGCCGCCTGGTTCACCTCGCCAACA
CCGGTGCCATCCCAGCTCGATGGAGAACCCAGGTCGTCGTCCCCCTCGTGAGGCATCTCCGGATCGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis