Browse Element(s) Details


OsAffx.23041.1.S1_at

Description gb:AK070348.1
DB_XREF= gi:32980372
TID=OsAffx.23041.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051D08, full insert sequence.
FL= gb:AK070348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2201010/11NAD, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21990NANA6+12716547..12720183retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g22000Os.57201.1.S1_at11/116+12738038..12738486expressed protein
LOC_Os06g22010OsAffx.32229.1.S1_x_at11/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.23041.1.S1_at10/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.26050.13.S1_x_at8/116+12743082..12746423NAD, putative
LOC_Os06g22010OsAffx.9230.1.S1_x_at1/116+12743082..12746423NAD, putative
LOC_Os06g22020OsAffx.15546.1.S1_at11/116+12750746..12752287Cytochrome P450 71C4, putative
LOC_Os06g22030Os.16446.1.S1_at11/116+12757543..12762701AT hook motif family protein, expressed
LOC_Os06g22030Os.40082.1.A1_x_at2/116+12757543..12762701AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0005739cellular_componentmitochondrion
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23041.1.S1_at--467--2996Chr10:20133163..20133187 (25 bp)
AATGTCTTACTTCATGGATTCGAGA
NONE
OsAffx.23041.1.S1_at--94--3458Chr12:21013245..21013264 (20 bp)
CAGTCGCCTGACAAATAGTTGGTTC
NONE
OsAffx.23041.1.S1_at--852--6557Chr10:20133229..20133253 (25 bp)
GATTCAGGTACCAATCCAGGTGCCT
NONE
OsAffx.23041.1.S1_at--1066--9779Chr12:8528071..8528094 (24 bp)
TAAGGTAAATATCCAGCCCACTAAA
NONE
OsAffx.23041.1.S1_at--357--1177Chr10:20133390..20133414 (25 bp)
AGTCAACTCTTGTAGCGGAACGATA
NONE
OsAffx.23041.1.S1_at--269--5997Chr10:20133415..20133439 (25 bp)
GAGACTCTATTTCACTTAGGTTGAT
NONE
OsAffx.23041.1.S1_at--533--7837Chr10:20133471..20133495 (25 bp)
GGTAATCCTCCTTTGAAACACTTTG
NONE
OsAffx.23041.1.S1_at--523--5539Chr12:8528261..8528450 (25 bp)
GAAACACTTTGGTATTGCTCTTAGA
NONE
OsAffx.23041.1.S1_at--486--3076Chr10:20133531..20133555 (25 bp)
AATCAGAGCGCAGGGAGCCATCTCA
NONE
OsAffx.23041.1.S1_at--873--4436Chr10:20133547..20133571 (25 bp)
GCCATCTCATTATCTTTCCGTAAAG
NONE
OsAffx.23041.1.S1_at--407--8636Chr10:20133580..20133604 (25 bp)
TGGTGGACTAACTGATCTTTCTATC
NONE
Target Sequence 
AATGTCTTACTTCATGGATTCGAGAGAATAGGAGAACAGTCGCCTGACAAATAGTTGGTTCAGTCCGATTCAGGTACCAA
TCCAGGTGCCTAAACAAATAGAACCTTTATTGATTTGCTAGTTGATAAGGTAAATATCCAGCCCACTAAATGCTAGGCTT
AATGAGGATAAGGGCCTCCAAAAAAATTCTTTTCGTTCTATGAACTTTAAGGTGTATGAAGTCTCATAGTCAACTCTTGT
AGCGGAACGATAGAGACTCTATTTCACTTAGGTTGATTTAATTTAGGCCGGAGGCAGACCTAAGTCAAGGTAATCCTCCT
TTGAAACACTTTGGTATTGCTCTTAGATAGATCATAATACAAATAATCAATCAGAGCGCAGGGAGCCATCTCATTATCTT
TCCGTAAAGAAAAACTATGGTGGACTAACTGATCTTTCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis