Browse Element(s) Details


Os.57205.1.S1_at

Description gb:AK111136.1
DB_XREF= gi:32996345
TID=Os.57205.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-D08, full insert sequence.
FL= gb:AK111136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4312011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43080NANA2+25934472..25938241salt-inducible protein, putative
LOC_Os02g43090Os.10557.1.S1_at11/112+25940594..25949456Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os02g43100OsAffx.12468.1.S1_at10/112+25949533..25950487hypothetical protein
LOC_Os02g43110Os.38169.1.S1_a_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os02g43110Os.38169.2.S1_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os02g43120Os.57205.1.S1_at11/112+25961884..25962865Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g43130Os.25560.1.S1_at11/112+25966617..25972993kinesin heavy chain, putative, expressed
LOC_Os02g43140OsAffx.12470.1.S1_at10/112+25980417..25981025hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57205.1.S1_at--435--4271Chr02:25962173..25962197 (25 bp)
CCTAGCCAGACAACCGACCAGGTGG
LOC_Os02g43120
Os.57205.1.S1_at--589--6411Chr02:25962079..25962103 (25 bp)
GATCTGCCGGTGACGCAGACACGAA
LOC_Os02g43120
Os.57205.1.S1_at--246--2471Chr02:25962049..25962073 (25 bp)
AACAAAGTACATTACGCTGGAGCTT
LOC_Os02g43120
Os.57205.1.S1_at--627--9951Chr02:25962037..25962061 (25 bp)
TACGCTGGAGCTTGTTCAGCTAGCT
LOC_Os02g43120
Os.57205.1.S1_at--412--1591Chr02:25962016..25962040 (25 bp)
AGCTCTGTGATGTTCATCGAGTACA
LOC_Os02g43120
Os.57205.1.S1_at--976--9831Chr02:25961995..25962019 (25 bp)
TACAGATTACAGAGTACCACCTAGT
LOC_Os02g43120
Os.57205.1.S1_at--868--2011Chr02:25961970..25961994 (25 bp)
ACTACTAGTACCTGTTCTTCCATGG
LOC_Os02g43120
Os.57205.1.S1_at--484--1771Chr02:25961961..25961985 (25 bp)
ACCTGTTCTTCCATGGTTCGTGACA
LOC_Os02g43120
Os.57205.1.S1_at--1021--6711Chr02:25961946..25961970 (25 bp)
GTTCGTGACAATGCTGCTCGTCGCG
LOC_Os02g43120
Os.57205.1.S1_at--1109--9331Chr02:25961926..25961950 (25 bp)
TCGCGTCGTCCATATGGATTAATGA
LOC_Os02g43120
Os.57205.1.S1_at--350--2931Chr02:25961902..25961926 (25 bp)
AAGGCATAATGCTCTTCCATTCGCA
LOC_Os02g43120
Target Sequence 
CCTAGCCAGACAACCGACCAGGTGGCCGCTGCTCCCTCTTCAGTCTTCCCTGCATGCCTTCCGGCTTCTAGCTTTGCCGC
CGCCGCCTCCGGCCGATCTGCCGGTGACGCAGACACGAAGTGACAACAAAGTACATTACGCTGGAGCTTGTTCAGCTAGC
TCTGTGATGTTCATCGAGTACAGATTACAGAGTACCACCTAGTACTACTAGTACCTGTTCTTCCATGGTTCGTGACAATG
CTGCTCGTCGCGTCGTCCATATGGATTAATGAAGGCATAATGCTCTTCCATTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis