Browse Element(s) Details


OsAffx.12468.1.S1_at

Description tigr:9630.m04134
TID=OsAffx.12468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4310010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43060NANA2+25925642..25928035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43070OsAffx.30921.1.S1_s_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.1.S1_x_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.2.S1_at3/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.24253.1.S1_x_at1/112+25931303..25932544hypothetical protein
LOC_Os02g43080NANA2+25934472..25938241salt-inducible protein, putative
LOC_Os02g43090Os.10557.1.S1_at11/112+25940594..25949456Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os02g43100OsAffx.12468.1.S1_at10/112+25949533..25950487hypothetical protein
LOC_Os02g43110Os.38169.1.S1_a_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os02g43110Os.38169.2.S1_at11/112+25951291..25953508Sodium/calcium exchanger 1 precursor, putative, expressed
LOC_Os02g43120Os.57205.1.S1_at11/112+25961884..25962865Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g43130Os.25560.1.S1_at11/112+25966617..25972993kinesin heavy chain, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12468.1.S1_at--958--1411Chr02:25949570..25949594 (25 bp)
AGAAATCTGCGCTCGGTGGAGAAGA
LOC_Os02g43100
OsAffx.12468.1.S1_at--1134--5031NONE
GCAGAGCGGTTAGGGTAGTCTATAT
NONE
OsAffx.12468.1.S1_at--619--7151Chr02:25950257..25950281 (25 bp)
GTCTATATTACTCCAGAGATTCTCA
LOC_Os02g43100
OsAffx.12468.1.S1_at--167--6571Chr02:25950274..25950298 (25 bp)
GATTCTCAAGGATGAAAGTACAACA
LOC_Os02g43100
OsAffx.12468.1.S1_at--326--2612Chr11:25981892..25981916 (25 bp)
AACCCAAAGGATCATGAAGTACACT
NONE
OsAffx.12468.1.S1_at--875--5332Chr11:25981907..25981931 (25 bp)
GAAGTACACTGATGTTGCCCAAGCC
NONE
OsAffx.12468.1.S1_at--823--2692Chr11:25981949..25981973 (25 bp)
AAGCTCGGCGCCAAGTATGACGCGA
NONE
OsAffx.12468.1.S1_at--1130--6872Chr11:25981963..25981987 (25 bp)
GTATGACGCGACGAAGAACCAAAAC
NONE
OsAffx.12468.1.S1_at--93--5372Chr11:25981978..25982002 (25 bp)
GAACCAAAACCGTGATGCAACCGAA
NONE
OsAffx.12468.1.S1_at--1097--6311Chr02:25950403..25950427 (25 bp)
GATGCAACCGAACGACGTCGCGAAG
LOC_Os02g43100
OsAffx.12468.1.S1_at--607--4072Chr11:25982004..25982027 (24 bp)
CGACGTCGCGAAGAAGACCAGAAGG
NONE
Target Sequence 
AGAAATCTGCGCTCGGTGGAGAAGAAGGCAGAGCGGTTAGGGTAGTCTATATTACTCCAGAGATTCTCAAGGATGAAAGT
ACAACAAAAACAACCCAAAGGATCATGAAGTACACTGATGTTGCCCAAGCCCACATCCTAGGGCCACCAAGCTCGGCGCC
AAGTATGACGCGACGAAGAACCAAAACCGTGATGCAACCGAACGACGTCGCGAAGAAGACCAGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis