Browse Element(s) Details


OsAffx.30921.2.S1_at

Description tigr:9639.m01016
TID=OsAffx.30921.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 50785-52656
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1074011/11pentatricopeptide, putative
LOC_Os02g430703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10710Os.12639.1.A1_at11/1111+5868962..5876181Protein kinase domain containing protein, expressed
LOC_Os11g10720OsAffx.30919.1.S1_at11/1111+5885009..5887312Leucine Rich Repeat family protein
LOC_Os11g10730OsAffx.30920.1.S1_at11/1111+5889307..5889690hypothetical protein
LOC_Os11g10740OsAffx.30921.1.S1_s_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.2.S1_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.1.S1_x_at2/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30921.2.S1_at--763--7491Chr11:5891648..5891672 (25 bp)
GTGGTGAGCTGGTCTACAATGATTC
LOC_Os11g10740
OsAffx.30921.2.S1_at--81--311Chr11:5891673..5891697 (25 bp)
ATAGCTACAGCATTCATGGCAAGGG
LOC_Os11g10740
OsAffx.30921.2.S1_at--430--7951Chr11:5891754..5891778 (25 bp)
GGATCACATTCACATCAGTTCTGTC
LOC_Os11g10740
OsAffx.30921.2.S1_at--819--1231Chr11:5891780..5891804 (25 bp)
AGTTGCAGCCACTCCGGGCTTGTAA
LOC_Os11g10740
OsAffx.30921.2.S1_at--466--5711Chr11:5891833..5891857 (25 bp)
GACTAAGGTTCATGGTGTCCACCCT
LOC_Os11g10740
OsAffx.30921.2.S1_at--1052--4251Chr11:5891855..5891879 (25 bp)
CCTGCTGCTGAGCACTATGCATGTA
LOC_Os11g10740
OsAffx.30921.2.S1_at--549--6911Chr11:5891877..5891901 (25 bp)
GTATGGTTGACCTCTTAGGGCGTGC
LOC_Os11g10740
OsAffx.30921.2.S1_at--1119--8171Chr11:5891934..5891958 (25 bp)
GGAAGATGCCCATGGAACCTTGTGC
LOC_Os11g10740
OsAffx.30921.2.S1_at--133--10292Chr11:5891974..5891998 (25 bp)
TTTGCTCTCTGCATGTGCTATGCAT
LOC_Os11g10740
OsAffx.30921.2.S1_at--351--7312Chr11:5892057..5892081 (25 bp)
GTGCTAGCAATTATGTTACCCTCTG
LOC_Os11g10740
OsAffx.30921.2.S1_at--651--6772Chr11:5892071..5892095 (25 bp)
GTTACCCTCTGTGGAATTTATGACG
LOC_Os11g10740
Target Sequence 
GTGGTGAGCTGGTCTACAATGATTCATAGCTACAGCATTCATGGCAAGGGGGAACAGGCATTGAAGGTTTACATGGAAAT
GTTGTCTGAGGGAGTGAAACCAAATTGGATCACATTCACATCAGTTCTGTCAAGTTGCAGCCACTCCGGGCTTGTAACCG
AGGGTCGGAAGATCTTCGAGTCGATGACTAAGGTTCATGGTGTCCACCCTGCTGCTGAGCACTATGCATGTATGGTTGAC
CTCTTAGGGCGTGCTGGAGCCATTGAAGAAGCTGTTGGGCTTATAAGGAAGATGCCCATGGAACCTTGTGCTAGCGTGTG
GGGAGCTTTGCTCTCTGCATGTGCTATGCATAATAACGTCGATGTTGGAGAGATTGCAGCTTTTAGGCTATTTGAGTTAG
AAGAAGGCAGTGCTAGCAATTATGTTACCCTCTGTGGAATTTATGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30921.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis