Browse Element(s) Details


Os.20557.1.S1_s_at

Description gb:CB669030
DB_XREF= gi:29672755
DB_XREF=OSJNEe01D14.r
CLONE=OSJNEe01D14
TID=Os.20557.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20557 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201492.1 (A.thaliana) disease resistance protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1076011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10720OsAffx.30919.1.S1_at11/1111+5885009..5887312Leucine Rich Repeat family protein
LOC_Os11g10730OsAffx.30920.1.S1_at11/1111+5889307..5889690hypothetical protein
LOC_Os11g10740OsAffx.30921.1.S1_s_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.2.S1_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.1.S1_x_at2/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed
LOC_Os11g10780Os.16051.1.S1_at11/1111+5917302..5919246Ulp1 protease family protein, putative, expressed
LOC_Os11g10790OsAffx.18789.1.S1_x_at11/1111+5932072..5932404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20557.1.S1_s_at--122--4971Chr11:5904845..5904869 (25 bp)
GCATCAAGTCTTTGCCGGAGAGCAT
LOC_Os11g10760
Os.20557.1.S1_s_at--1016--8051Chr11:5904829..5904853 (25 bp)
GGAGAGCATCGAACAACTCACTATG
LOC_Os11g10760
Os.20557.1.S1_s_at--48--5591Chr11:5904792..5904816 (25 bp)
GAAATTTCTGGCTGTCCTGAACTAA
LOC_Os11g10760
Os.20557.1.S1_s_at--14--7751Chr11:5903830..5903854 (25 bp)
GGTGTCTTCACTAATCTCAAGCTTG
LOC_Os11g10760
Os.20557.1.S1_s_at--834--2271Chr11:5903799..5903823 (25 bp)
AAATCCAGGAGCATCTCGGCGCTAT
LOC_Os11g10760
Os.20557.1.S1_s_at--985--4571Chr11:5903781..5903805 (25 bp)
GCGCTATATGTGCTGCCATGTCACT
LOC_Os11g10760
Os.20557.1.S1_s_at--982--8731Chr11:5903763..5903787 (25 bp)
TGTCACTGCCGGCATCTCAAAAATA
LOC_Os11g10760
Os.20557.1.S1_s_at--1101--7831Chr11:5903708..5903732 (25 bp)
GGTACTTCCAAGCTCCATGTCAATG
LOC_Os11g10760
Os.20557.1.S1_s_at--1045--3011Chr11:5903687..5903711 (25 bp)
AATGCTAGTCATTTCTGCCATAGGA
LOC_Os11g10760
Os.20557.1.S1_s_at--505--2911Chr11:5903649..5903673 (25 bp)
AAGGTTGTCATGTCTCTCATTTTCC
LOC_Os11g10760
Os.20557.1.S1_s_at--678--171Chr11:5903631..5903655 (25 bp)
ATTTTCCTACAGCTCATTGCATTGG
LOC_Os11g10760
Target Sequence 
GCATCAAGTCTTTGCCGGAGAGCATCGAACAACTCACTATGCTNGAACATCTAGAAATTTCTGGCTGTCCTGAACTAAAG
CAATGGTGTGAATTAGAGGATAGCAAAACGAAGCTTGCTCACATAAAAAATAAATGTTTTTGGTAGTGCTGGGAGGCTAG
AAGGTGTCTTCACTAATCTCAAGCTTGCGTTACAAATCCAGGAGCATCTCGGCGCTATATGTGCTGCCATGTCACTGCCG
GCATCTCAAAAATAAAATACAGATGTTTTTTGTTTTTTGATGGGGGTACTTCCAAGCTCCATGTCAATGCTAGTCATTTC
TGCCATAGGAGTTTCNCTAGGTACAAGGTTGTCATGTCTCTCATTTTCCTACAGCTCATTGCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20557.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis