Browse Element(s) Details


Os.16051.1.S1_at

Description gb:AK058342.1
DB_XREF= gi:32968360
TID=Os.16051.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16051 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D09, full insert sequence.
FL= gb:AK058342.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1078011/11Ulp1 protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed
LOC_Os11g10780Os.16051.1.S1_at11/1111+5917302..5919246Ulp1 protease family protein, putative, expressed
LOC_Os11g10790OsAffx.18789.1.S1_x_at11/1111+5932072..5932404hypothetical protein
LOC_Os11g10800Os.57156.1.S1_at10/1111+5942831..5943706Dirigent-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16051.1.S1_at--929--2051Chr11:5918015..5918039 (25 bp)
ACTTCCGCAAGGGTGTTCATTCATT
LOC_Os11g10780
Os.16051.1.S1_at--998--6231Chr11:5917865..5917889 (25 bp)
GATGGCAATATTTCACCAGCTATAT
LOC_Os11g10780
Os.16051.1.S1_at--492--1451Chr11:5917729..5917753 (25 bp)
AGCAAATTACCTGTTCATCTTCCTG
LOC_Os11g10780
Os.16051.1.S1_at--139--6871Chr11:5917664..5917688 (25 bp)
GTTTGTCATACAGTTCATGCCGTCA
LOC_Os11g10780
Os.16051.1.S1_at--293--411Chr11:5917604..5917628 (25 bp)
ATCAGTGTCAACCTAGCGCTGTCGA
LOC_Os11g10780
Os.16051.1.S1_at--743--1651Chr11:5917590..5917614 (25 bp)
AGCGCTGTCGAGATCTTTCGTTGAT
LOC_Os11g10780
Os.16051.1.S1_at--36--451Chr11:5917578..5917602 (25 bp)
ATCTTTCGTTGATCCAGGCTATTGA
LOC_Os11g10780
Os.16051.1.S1_at--75--1591Chr11:5917551..5917575 (25 bp)
AGCTGAAAGCCCCTTTTTTGGATAG
LOC_Os11g10780
Os.16051.1.S1_at--841--7911Chr11:5917532..5917556 (25 bp)
GGATAGGGTTCCATCAACATTCAGC
LOC_Os11g10780
Os.16051.1.S1_at--220--131Chr11:5917514..5917538 (25 bp)
ATTCAGCACCTGTTAGCCGTATAGA
LOC_Os11g10780
Os.16051.1.S1_at--12--6511Chr11:5917403..5917427 (25 bp)
GATTTCCACCACCTTTCAGAATATT
LOC_Os11g10780
Target Sequence 
ACTTCCGCAAGGGTGTTCATTCATTCCGAGAGAACAGAGAAAATGAAATTGCAGAATAGGTGAGCATGGTGGATGGCAAT
ATTTCACCAGCTATATGTAGTTATCAGAATACAACAGCAAATTACCTGTTCATCTTCCTGGTGGCACAACCTGAAGAAGT
TTGAAGACTGTCAAGAATTTGTTTGTCATACAGTTCATGCCGTCAAGAGGAAGATGGCTATTTCTCAGATACAAAGCAGC
ATCAGTGTCAACCTAGCGCTGTCGAGATCTTTCGTTGATCCAGGCTATTGATAAGCTGAAAGCCCCTTTTTTGGATAGGG
TTCCATCAACATTCAGCACCTGTTAGCCGTATAGAGTCACAGATGATTCATTCCTTAAAAAAAAAAGAATATTTAAACGA
TTTNNTACTATACTTATGCATTGTCTAGAAATGCTGGGTGGGATTTCCACCACCTTTCAGAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis