Browse Element(s) Details


Os.51866.1.S1_at

Description gb:AK064121.1
DB_XREF= gi:32974139
TID=Os.51866.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C02, full insert sequence.
FL= gb:AK064121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1077011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10720OsAffx.30919.1.S1_at11/1111+5885009..5887312Leucine Rich Repeat family protein
LOC_Os11g10730OsAffx.30920.1.S1_at11/1111+5889307..5889690hypothetical protein
LOC_Os11g10740OsAffx.30921.1.S1_s_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.2.S1_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.1.S1_x_at2/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed
LOC_Os11g10780Os.16051.1.S1_at11/1111+5917302..5919246Ulp1 protease family protein, putative, expressed
LOC_Os11g10790OsAffx.18789.1.S1_x_at11/1111+5932072..5932404hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51866.1.S1_at--260--1511Chr11:5912992..5913016 (25 bp)
AGCAGGGTGATTGCCATCGTAACCA
LOC_Os11g10770
Os.51866.1.S1_at--373--5351Chr11:5912945..5912969 (25 bp)
GAAGATTTGCACCACTGAACCGTAC
LOC_Os11g10770
Os.51866.1.S1_at--405--7031Chr11:5912924..5912948 (25 bp)
GTACAAACTAGAACCCCTGACAGAT
LOC_Os11g10770
Os.51866.1.S1_at--358--7951Chr11:5912770..5912794 (25 bp)
GGATATACTCTGCAACCCATGAAGT
LOC_Os11g10770
Os.51866.1.S1_at--258--8211Chr11:5912709..5912733 (25 bp)
GGAAGGCATCTACTTTCGAATGTAC
LOC_Os11g10770
Os.51866.1.S1_at--698--5271Chr11:5912692..5912716 (25 bp)
GAATGTACATCTTTGCCATATCATA
LOC_Os11g10770
Os.51866.1.S1_at--992--3531Chr11:5912658..5912682 (25 bp)
CATCCTTGTGATTGAGCTGCAGCAA
LOC_Os11g10770
Os.51866.1.S1_at--701--5051Chr11:5912640..5912664 (25 bp)
GCAGCAATATGCCTCCAAACCTGAG
LOC_Os11g10770
Os.51866.1.S1_at--866--5671Chr11:5912515..5912539 (25 bp)
GACATATTCTCTACTAGGCAGCTTG
LOC_Os11g10770
Os.51866.1.S1_at--902--7671Chr11:5912464..5912488 (25 bp)
GGGTTGTGCTTCCTTCAACAAACAA
LOC_Os11g10770
Os.51866.1.S1_at--231--2191Chr11:5912443..5912467 (25 bp)
ACAAAGGCTCCTTCAGTGAGTTTCT
LOC_Os11g10770
Target Sequence 
AGCAGGGTGATTGCCATCGTAACCACCCGAGATAAGGACATTGCAGAGAAGATTTGCACCACTGAACCGTACAAACTAGA
ACCCCTGACAGATGACATGTGCTGGAAAATAATAAAAGAAAAGAGTGTCTTTGAAGCAAGAGATGACAAAGAACAATTGG
AGAATATAGGAAGGGAAATAGCATCTAAGTGTGGAGGTGTGGCTTTAGCAGCCAAATCACTTGGATATACTCTGCAACCC
ATGAAGTTTGATGAATGGGTATCAGTGAGAAACAACGATATCTGGAAGGCATCTACTTTCGAATGTACATCTTTGCCATA
TCATAATGTGCTTGCATCCTTGTGATTGAGCTGCAGCAATATGCCTCCAAACCTGAGGTTATGCTTTGCATATTGTGCAA
TCTTTCCAAAAGGTCACATCATAGTAAAAGACCAAATAATTCACCAATGGAATGCTCTTGGTTTCATAGAGCAATCTGAC
ATATTCTCTACTAGGCAGCTTGGTGAGGCATATGTTAGACAGCTTTTGGGGTTGTGCTTCCTTCAACAAACAAAGGCTCC
TTCAGTGAGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis