Browse Element(s) Details


Os.13684.1.S1_at

Description gb:BI797155
DB_XREF= gi:15848893
DB_XREF=H067C12
CLONE=H067C12
TID=Os.13684.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.13684 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175046.1 (A.thaliana) serine carboxypeptidase II, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g107502/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10710Os.12639.1.A1_at11/1111+5868962..5876181Protein kinase domain containing protein, expressed
LOC_Os11g10720OsAffx.30919.1.S1_at11/1111+5885009..5887312Leucine Rich Repeat family protein
LOC_Os11g10730OsAffx.30920.1.S1_at11/1111+5889307..5889690hypothetical protein
LOC_Os11g10740OsAffx.30921.1.S1_s_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.2.S1_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.1.S1_x_at2/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed
LOC_Os11g10780Os.16051.1.S1_at11/1111+5917302..5919246Ulp1 protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13684.1.S1_at--1098--751Chr11:5894820..5894844 (25 bp)
ATGTCACAGTCCCATACAGCAGCTG
LOC_Os11g10750
Os.13684.1.S1_at--943--2111Chr11:5894815..5894839 (25 bp)
ACAGTCCCATACAGCAGCTGGTTCC
LOC_Os11g10750
Os.13684.1.S1_at--441--8571NONE
TGGTTCCCCAGAGGCCCGTTGGAGC
NONE
Os.13684.1.S1_at--7--7311NONE
GTGCGAGGACACATCTCACCTGGTC
NONE
Os.13684.1.S1_at--780--4071NONE
CGAGCTTCTCGGACATTTTTCAATC
NONE
Os.13684.1.S1_at--665--5351NONE
GAAGATCACCACACCAAATAGTCTA
NONE
Os.13684.1.S1_at--1014--3091NONE
AATAGTCTAGGATTTCTCCAGTTTT
NONE
Os.13684.1.S1_at--594--10091Chr02:2983794..2983819 (24 bp)
TAGGATTTCTCCAGTTTTGCTCACC
NONE
Os.13684.1.S1_at--714--9491NONE
TCTCCAGTTTTGCTCACCAGAAGAT
NONE
Os.13684.1.S1_at--789--10391NONE
TTTTGCTCACCAGAAGATTAGTTCA
NONE
Os.13684.1.S1_at--903--7711NONE
GGGTGTATTAGATGGCTCCAAATAC
NONE
Target Sequence 
ATGTCACAGTCCCATACAGCAGCTGGTTCCCCAGAGGCCCGTTGGAGCTGGGTACCCGAGTATGGTAATATTCTGACCTT
TGCGACGGTGCGAGGACACATCTCACCTGGTCCCCATTTGCGCAGCCCAGACCGAGCTTCTCGGACATTTTTCAATCATT
CGCACTTGGACGGAGACTCCCGAATCAAACCCCACCCCCCTATTAACTAAGTGTACCTACGAAAGGAGCTGAAGATCACC
ACACCAAATAGTCTAGGATTTCTCCAGTTTTGCTCACCAGAAGATTAGTTCATAAGGGTGTATTAGATGGCTCCAAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis