Browse Element(s) Details


OsAffx.30919.1.S1_at

Description tigr:9639.m01014
TID=OsAffx.30919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cf2Cf5 disease resistance protein homolog, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1072011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10690NANA11+5858886..5863640Protein kinase domain containing protein, expressed
LOC_Os11g10710Os.12639.1.A1_at11/1111+5868962..5876181Protein kinase domain containing protein, expressed
LOC_Os11g10720OsAffx.30919.1.S1_at11/1111+5885009..5887312Leucine Rich Repeat family protein
LOC_Os11g10730OsAffx.30920.1.S1_at11/1111+5889307..5889690hypothetical protein
LOC_Os11g10740OsAffx.30921.1.S1_s_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.2.S1_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.1.S1_x_at2/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30919.1.S1_at--292--7491Chr11:5886713..5886737 (25 bp)
GTGGGCATCGACTTGTCACTCAATA
LOC_Os11g10720
OsAffx.30919.1.S1_at--378--31Chr11:5886853..5886877 (25 bp)
ATTGGAATCACTTGACCTCTCGCGG
LOC_Os11g10720
OsAffx.30919.1.S1_at--1065--5831Chr11:5886866..5886890 (25 bp)
GACCTCTCGCGGAACAAATTTTCTG
LOC_Os11g10720
OsAffx.30919.1.S1_at--225--8451Chr11:5886910..5886934 (25 bp)
GGCCAATCTGGCATATCTAAGCTAC
LOC_Os11g10720
OsAffx.30919.1.S1_at--156--951Chr11:5886976..5887000 (25 bp)
AGGAAGCCAACTCGATACCCTCTAT
LOC_Os11g10720
OsAffx.30919.1.S1_at--1141--3691Chr11:5886997..5887021 (25 bp)
CTATGCCGAGAACCCTCACATATAT
LOC_Os11g10720
OsAffx.30919.1.S1_at--726--5531Chr11:5887026..5887050 (25 bp)
GAAACAACGGTCTCTATGGTCCTCC
LOC_Os11g10720
OsAffx.30919.1.S1_at--488--731Chr11:5887130..5887154 (25 bp)
ATGTTCTACTTTGGACTTGGGTCCG
LOC_Os11g10720
OsAffx.30919.1.S1_at--963--10851Chr11:5887207..5887231 (25 bp)
TTGGAGAATTGCCTTGTTTCGCCTC
LOC_Os11g10720
OsAffx.30919.1.S1_at--289--6851Chr11:5887222..5887246 (25 bp)
GTTTCGCCTCTTTGATAGGATACAC
LOC_Os11g10720
OsAffx.30919.1.S1_at--597--271Chr11:5887255..5887279 (25 bp)
ATATGTGTTTGTCGCCATAACCTGG
LOC_Os11g10720
Target Sequence 
GTGGGCATCGACTTGTCACTCAATAGTTTAACTGGTGGAATACCGGATGAGATCACTTCTCTTAAAAGATTGCTCAGTTT
AAATTTATCATGGAATCAATTGAGCGGAGAAATCGTAGAGAAGATTGGGGCGATGAATTCATTGGAATCACTTGACCTCT
CGCGGAACAAATTTTCTGGTGAAATTCCTCCAAGTTTGGCCAATCTGGCATATCTAAGCTACTTGGACTTGTCATACAAT
AATCTTACAGGAAGAATTCCACGAGGAAGCCAACTCGATACCCTCTATGCCGAGAACCCTCACATATATGATGGAAACAA
CGGTCTCTATGGTCCTCCCCTCCAAAGGAATTGCTTGGGCAGTGAACTACCAAAGAATAGCAGCCAAATCATGAGCAAAA
ATGTTTCTGATGAGCTAATGTTCTACTTTGGACTTGGGTCCGGGTTTACAGTTGGTCTCTGGGTTGTTTTCTGTGTTGTA
TTGTTCAAGAAAACTTGGAGAATTGCCTTGTTTCGCCTCTTTGATAGGATACACGACAAAGTATATGTGTTTGTCGCCAT
AACCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis