Browse Element(s) Details


Os.12639.1.A1_at

Description gb:CF330511
DB_XREF= gi:33809261
DB_XREF=NACL--06-E04.b1
CLONE=NACL--06-E04
TID=Os.12639.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.12639 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175645.1 (A.thaliana) coatomer complex subunit, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1071011/11Protein kinase domain containing protein, expressed
LOC_Os11g106801/11Coatomer beta subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10670OsAffx.18788.1.S1_at11/1111+5847521..5849867hypothetical protein
LOC_Os11g10680Os.7268.1.S1_at5/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10680Os.12639.1.A1_at1/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10690NANA11+5858886..5863640Protein kinase domain containing protein, expressed
LOC_Os11g10710Os.12639.1.A1_at11/1111+5868962..5876181Protein kinase domain containing protein, expressed
LOC_Os11g10720OsAffx.30919.1.S1_at11/1111+5885009..5887312Leucine Rich Repeat family protein
LOC_Os11g10730OsAffx.30920.1.S1_at11/1111+5889307..5889690hypothetical protein
LOC_Os11g10740OsAffx.30921.1.S1_s_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.2.S1_at11/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10740OsAffx.30921.1.S1_x_at2/1111+5890832..5892244pentatricopeptide, putative
LOC_Os11g10750Os.12187.1.S1_at11/1111+5894161..5898161Serine carboxypeptidase family protein, expressed
LOC_Os11g10750Os.13684.1.S1_at2/1111+5894161..5898161Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030126cellular_componentCOPI vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12639.1.A1_at--881--2032Chr11:5870008..5870032 (25 bp)
ACTTGAAGGACATACGGATTGCATT
LOC_Os11g10710
Os.12639.1.A1_at--282--1931Chr11:5869995..5870019 (25 bp)
ACGGATTGCATTACCTGTGTTTGTT
LOC_Os11g10710
Os.12639.1.A1_at--358--10651Chr11:5869972..5869996 (25 bp)
TTCCCATCCAGATCTTCCAATACTA
LOC_Os11g10710
Os.12639.1.A1_at--622--10631Chr11:5869958..5869982 (25 bp)
TTCCAATACTACTTACAGGTTCAAA
LOC_Os11g10710
Os.12639.1.A1_at--977--4791Chr11:5869757..5869781 (25 bp)
GCTCGGACAAGTTACTGCTATAATT
LOC_Os11g10710
Os.12639.1.A1_at--787--5311Chr11:5869329..5869751 (25 bp)
GAAGGGCTCAAAACGAGTTGTGATT
LOC_Os11g10710
Os.12639.1.A1_at--997--91Chr11:5869274..5869298 (25 bp)
ATTCGCCATGAAAAGCCTGGTCCCA
LOC_Os11g10710
Os.12639.1.A1_at--75--3291Chr11:5869231..5869255 (25 bp)
CAAACTGTTGGAGGGTTGGTGTCAA
LOC_Os11g10710
Os.12639.1.A1_at--321--5351Chr11:5869150..5869174 (25 bp)
GAAGACTAAATGAGCAACGTGGAGA
LOC_Os11g10710
Os.12639.1.A1_at--723--1911Chr11:5869134..5869158 (25 bp)
ACGTGGAGAGAAGACTTGGATAACC
LOC_Os11g10710
Os.12639.1.A1_at--311--10391Chr11:5869052..5869076 (25 bp)
TTTTCTCATTCCTTTTGCATCCCAG
LOC_Os11g10710
Target Sequence 
ACTTGAAGGACATACGGATTGCATTACCTGTGTTTGTTCCCATCCAGATCTTCCAATACTACTTACAGGTTCAAATGATG
AGACAGTTCGTCTGTGGAACTCCATAACCTTCAAGCTTGAGGGTGTACTGGACTTTGAGCTCGGACAAGTTACTGCTATA
ATTTGTTTGAAGGGCTCAAAACGAGTTGTGATTGGACATGATGCTGGATTAGTGATTACTGAAATTCGCCATGAAAAGCC
TGGTCCCAGCAACAGATAAGGATATTCAAACTGTTGGAGGGTTGGTGTCAAGCTAGNNNGACTGNATTGGAGACAGATAA
TGGTACTGCGCTTAATTAACTCATTCAGAAGACTAAATGAGCAACGTGGAGAGAAGACTTGGATAACCAAAGTTTTGTAA
TCTGACGTAGTGGATATTACCTGTATTAAGAAAACAAACTTTGTTTTTTCTCATTCCTTTTGCATCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12639.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis