Browse Element(s) Details


OsAffx.18788.1.S1_at

Description tigr:9639.m01009
TID=OsAffx.18788.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1067011/11hypothetical protein
LOC_Os03g149801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10620OsAffx.30917.1.S1_at11/1111+5823814..5824134NBS-LRR disease resistance protein, putative
LOC_Os11g10630NANA11+5827259..5829679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10640OsAffx.18786.1.S1_at11/1111+5830697..5836246Protein kinase domain containing protein, expressed
LOC_Os11g10650OsAffx.7066.1.S1_at11/1111+5837436..5838266hypothetical protein
LOC_Os11g10670OsAffx.18788.1.S1_at11/1111+5847521..5849867hypothetical protein
LOC_Os11g10680Os.7268.1.S1_at5/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10680Os.12639.1.A1_at1/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10690NANA11+5858886..5863640Protein kinase domain containing protein, expressed
LOC_Os11g10710Os.12639.1.A1_at11/1111+5868962..5876181Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18788.1.S1_at--221--4351Chr11:5848758..5848782 (25 bp)
CCAGCTCAGGTCTGTCCAGGGACAA
LOC_Os11g10670
OsAffx.18788.1.S1_at--905--7491Chr11:5848714..5848738 (25 bp)
GTGGTGTCCTCCATGATGCAGCCAA
LOC_Os11g10670
OsAffx.18788.1.S1_at--541--6331Chr11:5848581..5848724 (25 bp)
GATGCAGCCAACCTGTGTATCAAGA
LOC_Os11g10670
OsAffx.18788.1.S1_at--764--7111Chr11:5848532..5848556 (25 bp)
GTCATAGTGCACTCACGGTTGAAGA
LOC_Os11g10670
OsAffx.18788.1.S1_at--305--2791Chr11:5848511..5848535 (25 bp)
AAGAGATCATCCTGAGCTCCAAGAT
LOC_Os11g10670
OsAffx.18788.1.S1_at--96--6131Chr11:5848482..5848506 (25 bp)
GAGTGTGCAAGCCATATGATTCAGT
LOC_Os11g10670
OsAffx.18788.1.S1_at--706--7111Chr11:5848459..5848483 (25 bp)
GTCAGAGGGCGAATCTTCTGCTGCA
LOC_Os11g10670
OsAffx.18788.1.S1_at--800--8931Chr11:5847979..5848003 (25 bp)
TGACCCTGACATGTGCCTGAAGTAT
LOC_Os11g10670
OsAffx.18788.1.S1_at--1075--6871Chr11:5847943..5847967 (25 bp)
GTATATCCGGGCATATGCAGCAGAA
LOC_Os11g10670
OsAffx.18788.1.S1_at--532--172Chr11:5847895..5847919 (25 bp)
ATTTTCTTGCAATACAGCTGGTCAT
LOC_Os11g10670
OsAffx.18788.1.S1_at--24--7591Chr11:5847670..5847692 (23 bp)
GGGAATGAACGCGATCTTAAGGACA
LOC_Os11g10670
Target Sequence 
CCAGCTCAGGTCTGTCCAGGGACAAGGCATTCCTCCTGCTGGATGTGGTGTCCTCCATGATGCAGCCAACCTGTGTATCA
AGATTGAGAACAAGTTGCTTAGGAGCTGTCATAGTGCACTCACGGTTGAAGAGATCATCCTGAGCTCCAAGATCAAGGAG
TGTGCAAGCCATATGATTCAGTCAGAGGGCGAATCTTCTGCTGCAGCTGCAGGCTTGGTGGGGATCGCAAAGGAGGCTAG
GAAACTATCTTACTTGTTGAGTGAAGATGACCCTGACATGTGCCTGAAGTATGATATGTGTGAGTATATCCGGGCATATG
CAGCAGAAGTTTTAACCAAGCTTGAGAAAGAATTTTCTTGCAATACAGCTGGTCATGCTGCTGAAAATGGCATTACTGCT
AGTGACAAATCAGAGAAGCCTATAGGGAATGAACGCGATCTTAAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis