Browse Element(s) Details


OsAffx.18786.1.S1_at

Description tigr:9639.m01006
TID=OsAffx.18786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to stem rust resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1064011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10600OsAffx.18785.1.S1_at10/1111+5808753..5811520hypothetical protein
LOC_Os11g10600OsAffx.25936.5.S1_x_at1/1111+5808753..5811520hypothetical protein
LOC_Os11g10610OsAffx.7065.1.S1_s_at11/1111+5816301..5822197Leucine Rich Repeat family protein, expressed
LOC_Os11g10620OsAffx.30917.1.S1_at11/1111+5823814..5824134NBS-LRR disease resistance protein, putative
LOC_Os11g10630NANA11+5827259..5829679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10640OsAffx.18786.1.S1_at11/1111+5830697..5836246Protein kinase domain containing protein, expressed
LOC_Os11g10650OsAffx.7066.1.S1_at11/1111+5837436..5838266hypothetical protein
LOC_Os11g10670OsAffx.18788.1.S1_at11/1111+5847521..5849867hypothetical protein
LOC_Os11g10680Os.7268.1.S1_at5/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10680Os.12639.1.A1_at1/1111+5855489..5857459Coatomer beta subunit, putative
LOC_Os11g10690NANA11+5858886..5863640Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030126cellular_componentCOPI vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18786.1.S1_at--980--651Chr11:5832130..5832154 (25 bp)
ATGCAAGGTGTCCTAGCACATGGAA
LOC_Os11g10640
OsAffx.18786.1.S1_at--329--831Chr11:5832111..5832135 (25 bp)
ATGGAATCAAATTTAACCCGCACGA
LOC_Os11g10640
OsAffx.18786.1.S1_at--699--2611Chr11:5832097..5832121 (25 bp)
AACCCGCACGATTCATACAAATTTG
LOC_Os11g10640
OsAffx.18786.1.S1_at--1007--3111Chr11:5832078..5832102 (25 bp)
AATTTGCGGCTGCTTCCATGATGAA
LOC_Os11g10640
OsAffx.18786.1.S1_at--200--3151Chr11:5831934..5831958 (25 bp)
AATTCACATTGTTTGGGCATGGATC
LOC_Os11g10640
OsAffx.18786.1.S1_at--739--831Chr11:5831916..5831940 (25 bp)
ATGGATCTGCAGTGAGCTGTTTCGA
LOC_Os11g10640
OsAffx.18786.1.S1_at--529--4731Chr11:5831901..5831925 (25 bp)
GCTGTTTCGATTACTTCACTCGTGG
LOC_Os11g10640
OsAffx.18786.1.S1_at--224--2391Chr11:5831751..5831865 (25 bp)
AAACGGCTAGGATCTGGGACTGCAA
LOC_Os11g10640
OsAffx.18786.1.S1_at--1033--2311Chr11:5831384..5831408 (25 bp)
AAAGTCGGCGCTATAGTTTGTTTGA
LOC_Os11g10640
OsAffx.18786.1.S1_at--760--10551Chr11:5831053..5831077 (25 bp)
TTCGTAATGAACAACCTGGTCCCAG
LOC_Os11g10640
OsAffx.18786.1.S1_at--936--7791Chr11:5830735..5831060 (25 bp)
GGTCCCAGCAACAGGTTGACACAAT
LOC_Os11g10640
Target Sequence 
ATGCAAGGTGTCCTAGCACATGGAATCAAATTTAACCCGCACGATTCATACAAATTTGCGGCTGCTTCCATGATGAATGT
ACAGGTTTGGAATTTCCGTTCTTCCCGTCGTGAATTCACATTGTTTGGGCATGGATCTGCAGTGAGCTGTTTCGATTACT
TCACTCGTGGAAATCAGCAATACATAATAACTGGTTCTTTGGACAAAACGGCTAGGATCTGGGACTGCAAGAGCAGGACT
TGTGTTCAAATACTCATAGGGCATATGGATTGTGTTACCTGTGTTTGTTCCCATCCAGACCTGCCAATCCTACTTACAGG
TTCTAATGATGAGACAGTTCGTCTGTGGAACTCAATTACCTTCAAGCTTGAGGGTGTACTGGACTTTGAACTTGGAAAAG
TCGGCGCTATAGTTTGTTTGAAGGGTTCAAAACGGGTTGTGATAGGTCATCAGGCTGGACTAGTAATTACTGAAATTCGT
AATGAACAACCTGGTCCCAGCAACAGGTTGACACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis