Browse Element(s) Details


OsAffx.7065.1.S1_s_at

Description tigr:9639.m01003
TID=OsAffx.7065.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR disease resistance protein homologue, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1061011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10570OsAffx.18784.1.S1_at11/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10570Os.52574.2.S1_x_at1/1111+5792475..5797188Leucine Rich Repeat family protein
LOC_Os11g10580NANA11+5799043..5801418transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g10590Os.9836.1.S1_at4/1111+5804219..5804485hypothetical protein
LOC_Os11g10600OsAffx.18785.1.S1_at10/1111+5808753..5811520hypothetical protein
LOC_Os11g10600OsAffx.25936.5.S1_x_at1/1111+5808753..5811520hypothetical protein
LOC_Os11g10610OsAffx.7065.1.S1_s_at11/1111+5816301..5822197Leucine Rich Repeat family protein, expressed
LOC_Os11g10620OsAffx.30917.1.S1_at11/1111+5823814..5824134NBS-LRR disease resistance protein, putative
LOC_Os11g10630NANA11+5827259..5829679retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10640OsAffx.18786.1.S1_at11/1111+5830697..5836246Protein kinase domain containing protein, expressed
LOC_Os11g10650OsAffx.7066.1.S1_at11/1111+5837436..5838266hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7065.1.S1_s_at--188--7311Chr11:5816938..5816962 (25 bp)
GTGCGGCAGATATCATCGCATCCTG
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--879--3751Chr11:5816910..5816934 (25 bp)
CTCTCCTCTAGTGACTACTTTGAGT
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--1068--1191Chr11:5816888..5816912 (25 bp)
AGTATCAACTGCAAGGTTTCTCTTC
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--518--8891Chr11:5816862..5816886 (25 bp)
TGAGTGGAGGTTGCTTCACCACCTC
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--573--5191Chr11:5816806..5816830 (25 bp)
GCAATGATTGGACTATCTCAGCAGA
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--107--4631Chr11:5816739..5816763 (25 bp)
GCGATGGTATAACCAGGCCCAGCTG
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--1027--3291Chr11:5816713..5816737 (25 bp)
CAAATTGGTTGGGTCAGCTCGTGTC
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--625--7111Chr11:5816701..5816725 (25 bp)
GTCAGCTCGTGTCTCTTAAGGAATT
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--853--1751Chr11:5816557..5816581 (25 bp)
ACCTCGTCTCTCTCCAAAAATTGGA
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--1107--7251Chr11:5816526..5816550 (25 bp)
GTCCTGCCCAGACCTGAAGTATTTG
LOC_Os11g10610
OsAffx.7065.1.S1_s_at--808--6311Chr11:5816447..5816471 (25 bp)
GATGACATTGAGTCCTTGCCTGAGG
LOC_Os11g10610
Target Sequence 
GTGCGGCAGATATCATCGCATCCTGCTCCTCTCCTCTAGTGACTACTTTGAGTATCAACTGCAAGGTTTCTCTTCATGAG
TGGAGGTTGCTTCACCACCTCCCGGACCTCAAAGGCTTAATTATCAATGATTGCAATGATTGGACTATCTCAGCAGAGAT
CATCAGAGCCCTCTCCTCTCTAGAATCATTGACTCTGGAGCGATGGTATAACCAGGCCCAGCTGCCAAATTGGTTGGGTC
AGCTCGTGTCTCTTAAGGAATTGAAAATAAACAGGTTCGAGATGAACGAATCACAGGAGGACATCAAACATCTCATGTCG
CTACAGAAACTATGTCTGCATAGATGTACAAGCATGACAAAGCTACCAAAATGGGTGGGAGACCTCGTCTCTCTCCAAAA
ATTGGAGATCTTGTCCTGCCCAGACCTGAAGTATTTGCCAGAGAGCATGGGGTGCCTCACCTCTCTCAAGAAACTTAATA
TCAGCTTTTGCGATGACATTGAGTCCTTGCCTGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7065.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis