Browse Element(s) Details


OsAffx.18789.1.S1_x_at

Description tigr:9639.m01021
TID=OsAffx.18789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1079011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10760Os.20557.1.S1_s_at11/1111+5903428..5907411Leucine Rich Repeat family protein, expressed
LOC_Os11g10770Os.51866.1.S1_at11/1111+5907405..5914490NB-ARC domain containing protein, expressed
LOC_Os11g10780Os.16051.1.S1_at11/1111+5917302..5919246Ulp1 protease family protein, putative, expressed
LOC_Os11g10790OsAffx.18789.1.S1_x_at11/1111+5932072..5932404hypothetical protein
LOC_Os11g10800Os.57156.1.S1_at10/1111+5942831..5943706Dirigent-like protein, expressed
LOC_Os11g10810NANA11+5946958..5947950retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18789.1.S1_x_at--991--9271Chr11:5932240..5932264 (25 bp)
TCCGGCCGTTCCTTGCTCGACGACG
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--752--3271Chr11:5932272..5932296 (25 bp)
CAACAACAATGATGCCACATCGCCG
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--1159--2451Chr11:5932273..5932297 (25 bp)
AACAACAATGATGCCACATCGCCGC
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--919--2451Chr11:5932276..5932300 (25 bp)
AACAATGATGCCACATCGCCGCCGT
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--976--2991Chr11:5932279..5932303 (25 bp)
AATGATGCCACATCGCCGCCGTCGT
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--209--9451Chr11:5932328..5932352 (25 bp)
TCGGCGACATCGTGGTGCTAAACAG
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--483--3931Chr11:5932329..5932353 (25 bp)
CGGCGACATCGTGGTGCTAAACAGC
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--81--8391Chr11:5932330..5932354 (25 bp)
GGCGACATCGTGGTGCTAAACAGCG
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--9--4611Chr11:5932331..5932355 (25 bp)
GCGACATCGTGGTGCTAAACAGCGC
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--74--4111Chr11:5932332..5932356 (25 bp)
CGACATCGTGGTGCTAAACAGCGCG
LOC_Os11g10790
OsAffx.18789.1.S1_x_at--483--8611Chr11:5932340..5932364 (25 bp)
TGGTGCTAAACAGCGCGCTGACGGA
LOC_Os11g10790
Target Sequence 
TCCGGCCGTTCCTTGCTCGACGACGGCGACGGCAACAACAATGATGCCACATCGCCGCCGTCGTCGTCCTCGCCGCCGCG
GCGGCAGTTCGGCGACATCGTGGTGCTAAACAGCGCGCTGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18789.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis