Browse Element(s) Details


Os.57156.1.S1_at

Description gb:AK111039.1
DB_XREF= gi:32996248
TID=Os.57156.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A12, full insert sequence.
FL= gb:AK111039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1080010/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10780Os.16051.1.S1_at11/1111+5917302..5919246Ulp1 protease family protein, putative, expressed
LOC_Os11g10790OsAffx.18789.1.S1_x_at11/1111+5932072..5932404hypothetical protein
LOC_Os11g10800Os.57156.1.S1_at10/1111+5942831..5943706Dirigent-like protein, expressed
LOC_Os11g10810NANA11+5946958..5947950retrotransposon protein, putative, unclassified
LOC_Os11g10820NANA11+5958154..5965049retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g10830Os.46995.1.S1_x_at1/1111+5965379..5968306retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57156.1.S1_at--5--8111Chr11:5943218..5943242 (25 bp)
GGACCTGAGCATGCACCTGGTGATG
LOC_Os11g10800
Os.57156.1.S1_at--212--10011Chr11:5943435..5943459 (25 bp)
TAGCTAGCAGCCTGACACACTACGT
LOC_Os11g10800
Os.57156.1.S1_at--1130--2011Chr11:5943453..5943477 (25 bp)
ACTACGTACAGCTAGAACGCGCGCG
LOC_Os11g10800
Os.57156.1.S1_at--832--591Chr11:5943488..5943512 (25 bp)
ATGCCTATGCCTTTTCATTTCATGT
LOC_Os11g10800
Os.57156.1.S1_at--978--1711Chr11:5943532..5943556 (25 bp)
ACCAGCGTCCTGTGATGTATTGTAC
LOC_Os11g10800
Os.57156.1.S1_at--369--51Chr11:5943550..5943574 (25 bp)
ATTGTACTGTACTGTAGCTCGTCTA
LOC_Os11g10800
Os.57156.1.S1_at--740--171Chr11:5943574..5943598 (25 bp)
ATTTTCGATTTTTTGCATGAGCACG
LOC_Os11g10800
Os.57156.1.S1_at--780--4991Chr11:5943588..5943612 (25 bp)
GCATGAGCACGTCTGCATGTTTGCA
LOC_Os11g10800
Os.57156.1.S1_at--862--3512Chr11:5943603..5943627 (25 bp)
CATGTTTGCAGCGTGAGCGTCGTGT
LOC_Os11g10800
Os.57156.1.S1_at--1097--8511Chr11:5943648..5943672 (25 bp)
TGGAACGCGTCTTCTCATGGACAAT
LOC_Os11g10800
Os.57156.1.S1_at--715--5051NONE
GCAGCAGCGCACAAACTACATTCTA
NONE
Target Sequence 
GGACCTGAGCATGCACCTGGTGATGGAGGCCGGCGAGCACCGCGGCAGCTCGGTGGCGATCAAGGGCCGGATCGACGTCG
GCGTCGGCGTGCGCGAGTCGGTGGTCGTCGGCGGCACCGGCCGGTTCCGGCTCGCGCGCGGGTACATGGCCAGCAGCAGC
TACGACTGCAGCCTCGCCGCCGGCGGCGTCGTCGAGATCCACGTCTACCTGCAGCACTAGCTAGCAGCCTGACACACTAC
GTACAGCTAGAACGCGCGCGCCTCTCCTGCATGCCTATGCCTTTTCATTTCATGTGTTCTTGCTAAAGTTGTAACCAGCG
TCCTGTGATGTATTGTACTGTACTGTAGCTCGTCTATTTTCGATTTTTTGCATGAGCACGTCTGCATGTTTGCAGCGTGA
GCGTCGTGTGTTCCGGTCACGTTCGTGCCTGGAACGCGTCTTCTCATGGACAATTAAAGGCAGCAGCGCACAAACTACAT
TCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis