Browse Element(s) Details


Os.57304.1.S1_at

Description gb:AK111270.1
DB_XREF= gi:32996479
TID=Os.57304.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57304 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F11, full insert sequence.
FL= gb:AK111270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3603011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36010OsAffx.32048.1.S1_at11/1112+22009539..22009883hypothetical protein
LOC_Os12g36020NANA12+22012783..22014060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36030Os.18139.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.20279.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.57304.1.S1_at11/1112+22014244..22020753expressed protein
LOC_Os12g36030Os.51777.1.S1_at2/1112+22014244..22020753expressed protein
LOC_Os12g36030OsAffx.10695.1.S1_at2/1112+22014244..22020753expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57304.1.S1_at--1123--6911Chr12:22020393..22020417 (25 bp)
GTAGGTGTACGTGAACTATCAGGTA
LOC_Os12g36030
Os.57304.1.S1_at--657--51Chr12:22020442..22020466 (25 bp)
ATTGATCAATGATCTCCTCGTCACC
LOC_Os12g36030
Os.57304.1.S1_at--551--7031Chr12:22020461..22020485 (25 bp)
GTCACCCACAAATACCTTTAGGCTT
LOC_Os12g36030
Os.57304.1.S1_at--994--9931Chr12:22020473..22020497 (25 bp)
TACCTTTAGGCTTGGAAGACATCAA
LOC_Os12g36030
Os.57304.1.S1_at--877--1051Chr12:22020507..22020531 (25 bp)
AGGGACACTTGTATCCAAGGGCGGA
LOC_Os12g36030
Os.57304.1.S1_at--9--3131Chr12:22020560..22020584 (25 bp)
AATTTGATGAAACTACTACTGGCTC
LOC_Os12g36030
Os.57304.1.S1_at--174--1951Chr12:22020577..22020601 (25 bp)
ACTGGCTCAGTATAACGGTGTTTAG
LOC_Os12g36030
Os.57304.1.S1_at--244--9991Chr12:22020599..22020623 (25 bp)
TAGGCATGTGTCTTAGGGTTTTTAA
LOC_Os12g36030
Os.57304.1.S1_at--970--2511Chr12:22020627..22020651 (25 bp)
AACTTCATGGGTTGTTAGATGGCAC
LOC_Os12g36030
Os.57304.1.S1_at--884--6231Chr12:22020644..22020668 (25 bp)
GATGGCACGAACATTGAGTTTCTAA
LOC_Os12g36030
Os.57304.1.S1_at--83--1251Chr12:22020703..22020727 (25 bp)
AGTTGAGTTACATTGTTTGTCTTCA
LOC_Os12g36030
Target Sequence 
GTAGGTGTACGTGAACTATCAGGTAATTAGGAAAACACATATGGGGAGCATTGATCAATGATCTCCTCGTCACCCACAAA
TACCTTTAGGCTTGGAAGACATCAAGAATACAGTAGGGACACTTGTATCCAAGGGCGGAGACAAGGGTAGAGCAGCTAGA
GCTTGGGAATTTGATGAAACTACTACTGGCTCAGTATAACGGTGTTTAGGCATGTGTCTTAGGGTTTTTAATGGAACTTC
ATGGGTTGTTAGATGGCACGAACATTGAGTTTCTAATTGTTCTATTTGTATCAGAAGCTACAACATGTAAAGTTGAGTTA
CATTGTTTGTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis