Browse Element(s) Details


Os.57430.1.S1_at

Description gb:AY224497.1
DB_XREF= gi:29367520
TID=Os.57430.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 31119 protein kinase-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) isolate 31119 protein kinase-like protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g085308/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08510NANA2+4594749..4595333expressed protein
LOC_Os02g08520Os.10866.1.S1_at11/112+4598612..4601355Proteasome subunit beta type 3, putative, expressed
LOC_Os02g08530Os.57430.1.S1_at8/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08530Os.49254.1.S1_at1/112+4604251..4607446Protein kinase domain containing protein, expressed
LOC_Os02g08540Os.20642.1.S1_at10/112+4616844..4622097expressed protein
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os02g09050OsAffx.11943.1.S1_s_at8/112+4629504..4630087expressed protein
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57430.1.S1_at--177--1271NONE
AGATTTCGGCCTTGCAGTTAACCAT
NONE
Os.57430.1.S1_at--926--6951NONE
GTAGCTCCCCGAGTACTTGGAAGTT
NONE
Os.57430.1.S1_at--358--6931Chr02:4604927..4604951 (25 bp)
GTAGTACTTCTTGAACTTCTGTTGG
LOC_Os02g08530
Os.57430.1.S1_at--593--4671NONE
GCGGCCCGTCGAGAAGACAGCACAA
NONE
Os.57430.1.S1_at--1048--5111Chr02:4604879..4604903 (25 bp)
GCACAATCTCAGTGCCAGTCAATTG
LOC_Os02g08530
Os.57430.1.S1_at--417--9811Chr02:4604670..4604694 (25 bp)
TAACTGACCGATCAAAGCTCCCTAA
LOC_Os02g08530
Os.57430.1.S1_at--333--1473Chr02:7884802..7884821 (20 bp)
AGCTCCCTAACATAATTGACCCCAT
NONE
Os.57430.1.S1_at--112--9991Chr02:4604522..4604623 (25 bp)
TACCAACAGGTTGCTGCGGTGGCTG
LOC_Os02g08530
Os.57430.1.S1_at--857--7311Chr02:4604498..4604522 (25 bp)
GTGCTCTGTGTGCAGCCAGAACCAA
LOC_Os02g08530
Os.57430.1.S1_at--978--3071Chr02:4604460..4604484 (25 bp)
AATCACAGATGTACTCCACTCTCTG
LOC_Os02g08530
Os.57430.1.S1_at--452--8131Chr02:4604407..4604431 (25 bp)
GGACACTGAGGATTTCCCCGGAATC
LOC_Os02g08530
Target Sequence 
AGATTTCGGCCTTGCAGTTAACCATTGGGAATCCCCGCCAAAGGAAATTTTAAAACCTTTCTGGGGACATTGGGGCCTAT
GTAGCTCCCCGAGTACTTGGAAGTTAACTGAGAAGAGTGATGTATATGCGTTTGGAGTAGTACTTCTTGAACTTCTGTTG
GGAAGGCGGCCCGTCGAGAAGACAGCACAATCTCAGTGCCAGTCAATTGTTACATGGGTACCCAACATTCTGCCTCAGCT
AACTGACCGATCAAAGCTCCCTAACATAATTGACCCCATGATCAAGAACACAATGGATCTGAAGCACTTGTACCAACAGG
TTGCTGCGGTGGCTGTGCTCTGTGTGCAGCCAGAACCAAGTTACAGGCCACTAATCACAGATGTACTCCACTCTCTGATT
CCCCTAGTCCCCATGGAGCTTGGAGGGACACTGAGGATTTCCCCGGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis