Browse Element(s) Details


Os.5794.1.S1_a_at

Description gb:AK105404.1
DB_XREF= gi:32990613
TID=Os.5794.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E02, full insert sequence.
FL= gb:AK105404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1080011/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10780OsAffx.3193.1.S1_at11/113+5487907..5495787XPG I-region family protein, expressed
LOC_Os03g10790OsAffx.25044.1.S1_at11/113+5496709..5501502cytochrome b5 domain-containing protein, putative
LOC_Os03g10800Os.5794.1.S1_a_at11/113+5509785..5513434transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10810OsAffx.25045.1.S1_at11/113+5517813..5519436acetyltransferase, GNAT family protein, expressed
LOC_Os03g10820OsAffx.12813.1.S1_s_at11/113+5526246..5530487expressed protein
LOC_Os03g10830OsAffx.25046.1.S1_at11/113+5537093..5537856hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5794.1.S1_a_at--45--7231Chr03:5512918..5512942 (25 bp)
GTCGACGCCGAAGAAGGCGGCTCAC
LOC_Os03g10800
Os.5794.1.S1_a_at--482--9411Chr03:5513003..5513027 (25 bp)
TCGTCGGACAGTGCGATCTTGCAGA
LOC_Os03g10800
Os.5794.1.S1_a_at--1134--2671Chr03:5513027..5513051 (25 bp)
AAGCTGGAGCTTCCCAAGAGGACCC
LOC_Os03g10800
Os.5794.1.S1_a_at--13--1691Chr03:5513067..5513091 (25 bp)
AGCCGGCTGCTGTGTAGCGTTAGCT
LOC_Os03g10800
Os.5794.1.S1_a_at--1047--1631Chr03:5513082..5513106 (25 bp)
AGCGTTAGCTTCCTGCATGAATTCT
LOC_Os03g10800
Os.5794.1.S1_a_at--702--10571Chr03:5513103..5513127 (25 bp)
TTCTCAGTGGATTCGTAAGGATCGT
LOC_Os03g10800
Os.5794.1.S1_a_at--542--7971Chr03:5513121..5513145 (25 bp)
GGATCGTTAGGTTCTTAGCTGCTGC
LOC_Os03g10800
Os.5794.1.S1_a_at--475--2971Chr03:5513191..5513215 (25 bp)
AATGGTTTACACGTCTGTTGGTAGG
LOC_Os03g10800
Os.5794.1.S1_a_at--720--7391Chr03:5513227..5513251 (25 bp)
GTGAGGTCTGCTTTTAGGTGATCTT
LOC_Os03g10800
Os.5794.1.S1_a_at--856--10051Chr03:5513254..5513278 (25 bp)
TAGTAGCATTGTAGGCTTGCCATGA
LOC_Os03g10800
Os.5794.1.S1_a_at--824--8291Chr03:5513267..5513291 (25 bp)
GGCTTGCCATGAAACCTATGAAAAT
LOC_Os03g10800
Target Sequence 
GTCGACGCCGAAGAAGGCGGCTCACCGGANGACGACGACGGTGCCAACCGGCAAAGGGCAGTCCGGTGAGCGCAGCAGCT
CGGACTCGTCGGACAGTGCGATCTTGCAGAAGCTGGAGCTTCCCAAGAGGACCCCCTCCAGGAGCACGAAGCCGGCTGCT
GTGTAGCGTTAGCTTCCTGCATGAATTCTCAGTGGATTCGTAAGGATCGTTAGGTTCTTAGCTGCTGCTTCTTTTCTTTC
TTTCTTCATGAATGTTGCATAGAAGCAAGAACTAATGGTTTACACGTCTGTTGGTAGGGATGTTATAATGTGAGGTCTGC
TTTTAGGTGATCTTGTTAGTAGCATTGTAGGCTTGCCATGAAACCTATGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5794.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis