Browse Element(s) Details


Os.5953.1.S1_s_at

Description gb:AK108131.1
DB_XREF= gi:32993340
TID=Os.5953.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D10, full insert sequence.
FL= gb:AK108131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3126011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified
LOC_Os09g31260Os.5953.1.S1_s_at11/119+18798382..18799056expressed protein
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed
LOC_Os09g31290OsAffx.6462.1.S1_at11/119+18810700..18811891hypothetical protein
LOC_Os09g31300Os.20361.1.A1_at11/119+18813191..18816005Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5953.1.S1_s_at--1085--6171Chr09:18798814..18798838 (25 bp)
GAGGAGCAGCCCAAGGGCTACCTAT
LOC_Os09g31260
Os.5953.1.S1_s_at--497--2931Chr09:18798803..18798827 (25 bp)
CAAGGGCTACCTATTCAACCGGCCG
LOC_Os09g31260
Os.5953.1.S1_s_at--283--4511Chr09:18798589..18798613 (25 bp)
GCCGAGTGATCTGCGCGCCTCAGGT
LOC_Os09g31260
Os.5953.1.S1_s_at--253--7831Chr09:18798567..18798591 (25 bp)
GGTCACCTCGAACCCTAGAATACTG
LOC_Os09g31260
Os.5953.1.S1_s_at--871--5231Chr09:18798550..18798574 (25 bp)
GAATACTGCATCTGTTTTACTCCCA
LOC_Os09g31260
Os.5953.1.S1_s_at--1020--8691Chr09:18798510..18798534 (25 bp)
TGTGCGGGATGAACACTGTGCTCTT
LOC_Os09g31260
Os.5953.1.S1_s_at--914--2471Chr09:18798499..18798523 (25 bp)
AACACTGTGCTCTTGTTTCTGTTTT
LOC_Os09g31260
Os.5953.1.S1_s_at--373--10391Chr09:18798477..18798501 (25 bp)
TTTTGTTCTGTTTCCTCGTGGAATT
LOC_Os09g31260
Os.5953.1.S1_s_at--724--8771Chr09:18798469..18798493 (25 bp)
TGTTTCCTCGTGGAATTTGTCCAAT
LOC_Os09g31260
Os.5953.1.S1_s_at--581--10231Chr09:18798454..18798478 (25 bp)
TTTGTCCAATGATGGCGAATGCCCT
LOC_Os09g31260
Os.5953.1.S1_s_at--652--8391Chr09:18798441..18798465 (25 bp)
GGCGAATGCCCTGAACATTTTGAAA
LOC_Os09g31260
Target Sequence 
GAGGAGCAGCCCAAGGGCTACCTATTCAACCGGCCGCCGCCGCCGGCGGGGGAGTCGCGGAAGTGGGAGGACTGGGAGTT
GCCCTGCTACGTCACCTCGTTCCTCACCGTCGTCATCCTCGGCGTCGGGCTCAACGCCAAGCCCGACCTCACCCTCGAGA
CCTGGGCGCACCAGAAGGCGCTCGAGCGCCTNCNNGCAGCAGGAGCTGGCCTCCGGGGAGGCCCAGGCCGAGTGATCTGC
GCGCCTCAGGTCACCTCGAACCCTAGAATACTGCATCTGTTTTACTCCCAATAAGATGTTTGAGATGTGCGGGATGAACA
CTGTGCTCTTGTTTCTGTTTTTGTTCTGTTTCCTCGTGGAATTTGTCCAATGATGGCGAATGCCCTGAACATTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5953.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis