Browse Element(s) Details


Os.8446.1.S1_at

Description gb:AK070460.1
DB_XREF= gi:32980484
TID=Os.8446.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048I06, full insert sequence.
FL= gb:AK070460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3123010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os09g31210Os.54483.1.S1_at11/119+18768773..18770493Protein kinase domain containing protein, expressed
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein
LOC_Os09g31240NANA9+18788586..18790289retrotransposon protein, putative, unclassified
LOC_Os09g31250Os.2500.1.S1_at1/119+18790869..18793691transposon protein, putative, unclassified
LOC_Os09g31260Os.5953.1.S1_s_at11/119+18798382..18799056expressed protein
LOC_Os09g31270OsAffx.17972.1.S1_at11/119+18800409..18802436glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g31280Os.15215.1.S1_at11/119+18804788..18807713OTU-like cysteine protease family protein, putative, expressed
LOC_Os09g31290OsAffx.6462.1.S1_at11/119+18810700..18811891hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8446.1.S1_at--967--2791Chr09:18782523..18782547 (25 bp)
AAGATGTGATCACCACATTCCCCTG
LOC_Os09g31230
Os.8446.1.S1_at--880--4651Chr09:18782499..18782523 (25 bp)
GCGTCGCGGCTCCTGTTGTCTACTG
LOC_Os09g31230
Os.8446.1.S1_at--597--9511Chr09:18782290..18782314 (25 bp)
TCTCGTTCGACTACACGGCAAGGTG
LOC_Os09g31230
Os.8446.1.S1_at--185--2331Chr09:18782169..18782193 (25 bp)
AAAGAGAGCCTCTTGGTCTTGGGTT
LOC_Os09g31230
Os.8446.1.S1_at--747--3611Chr09:18782158..18782182 (25 bp)
CTTGGTCTTGGGTTGCAGATTTGCT
LOC_Os09g31230
Os.8446.1.S1_at--930--5571Chr09:18782113..18782137 (25 bp)
GAAATTGGTCGGGAAGGAACTGCTT
LOC_Os09g31230
Os.8446.1.S1_at--848--8171Chr09:18782098..18782122 (25 bp)
GGAACTGCTTTGCAACAGACGCTGA
LOC_Os09g31230
Os.8446.1.S1_at--741--5451Chr09:18782071..18782095 (25 bp)
GAACGAACAGCACTTGGATATCCTC
LOC_Os09g31230
Os.8446.1.S1_at--267--7951Chr09:18782056..18782080 (25 bp)
GGATATCCTCATGGCAAAATGCTAG
LOC_Os09g31230
Os.8446.1.S1_at--364--4851Chr09:18782036..18782060 (25 bp)
GCTAGAGTGTTTAGAACCCATCCCC
LOC_Os09g31230
Os.8446.1.S1_at--7--7411Chr09:18781972..18781995 (24 bp)
GTGATTGGTTCACTCTTGGCAAAAA
NONE
Target Sequence 
AAGATGTGATCACCACATTCCCCTGCGTCGCGGCTCCTGTTGTCTACTGCCCCCCTTCACCGGAGGATGTNGCGNAGAAA
GTAGCAGACGCAGGCGNNGAACGCGGAGCCGGACCTGAGGGCCTCCATGGTGCAGAGGAGAGGGTACACCAGCGACGACG
ACCTGGACGACCTGGGCAACCCCCTGGCGTCCCTGTACGACAGGAGCTCTCCACCCTCACCCTGCAACGGGGCCTCTCGT
TCGACTACACGGCAAGGTGGNTCTATGTCGAACGNNNNANNNGANNNNNTNNNNGNNNNNNNTNNNNGGNNNNNNNTNGT
TTGAGTAACCAGTGAAAGTGTGGAACGGAAGACGAAAAGAGAGCCTCTTGGTCTTGGGTTGCAGATTTGCTGTGAGGTGA
ACAAGGGGTTGGAAATTGGTCGGGAAGGAACTGCTTTGCAACAGACGCTGAATGAACGAACAGCACTTGGATATCCTCAT
GGCAAAATGCTAGAGTGTTTAGAACCCATCCCCCCATTCTTCTCATGTATATTTGCATTTTGATTCTGTTGAAGTGATTG
GTTCACTCTTGGCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis