Browse Element(s) Details


Os.2407.1.S1_at

Description gb:AF140722.2
DB_XREF= gi:33414598
TID=Os.2407.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.2407 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) multiple stress-responsive zinc-finger protein mRNA, complete cds.
PROD=multiple stress-responsive zinc-finger protein
FL= gb:AF140722.2 gb:AK106128.1 gb:AK119793.1 gb:AK061067.1 gb:AK070140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3120011/11Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein
LOC_Os09g31150Os.51785.1.S1_at11/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.1.S1_x_at9/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.2.S1_x_at2/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.29835.1.S1_x_at1/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160OsAffx.17971.1.S1_at9/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.55225.1.S1_at5/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.57362.1.S1_at1/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31170Os.55757.1.S1_s_at11/119+18748303..18751487expressed protein
LOC_Os09g31170OsAffx.30106.1.S1_at6/119+18748303..18751487expressed protein
LOC_Os09g31180Os.9253.1.S1_s_at11/119+18751264..1875319760S ribosomal protein L9, putative, expressed
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os09g31210Os.54483.1.S1_at11/119+18768773..18770493Protein kinase domain containing protein, expressed
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein
LOC_Os09g31230Os.8446.1.S1_at10/119+18781976..18787014expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2407.1.S1_at--86--9571Chr09:18759987..18760011 (25 bp)
TCTTCTTTGTCGTCACCGGTGCTCG
LOC_Os09g31200
Os.2407.1.S1_at--488--7211Chr09:18759995..18760019 (25 bp)
GTCGTCACCGGTGCTCGACAAGCAG
LOC_Os09g31200
Os.2407.1.S1_at--961--2591Chr09:18760137..18760161 (25 bp)
AACCGGTGCTCCAGGTGCCGGAAGC
LOC_Os09g31200
Os.2407.1.S1_at--851--7251Chr09:18760151..18760175 (25 bp)
GTGCCGGAAGCGTGTCGGCCTCACC
LOC_Os09g31200
Os.2407.1.S1_at--850--531Chr09:18760275..18760299 (25 bp)
ATCGCCAGGGACAACCCGGTGGTGC
LOC_Os09g31200
Os.2407.1.S1_at--545--3011Chr09:18760349..18760373 (25 bp)
AATCTACTGTTTTAGCAAGAAATGG
LOC_Os09g31200
Os.2407.1.S1_at--640--5311Chr09:18760392..18760416 (25 bp)
GAAGGTGTGGATGTTATTATTATGC
LOC_Os09g31200
Os.2407.1.S1_at--1037--10411Chr09:18760405..18760429 (25 bp)
TTATTATTATGCTGTTCTCTTCTCG
LOC_Os09g31200
Os.2407.1.S1_at--147--631Chr09:18760413..18760437 (25 bp)
ATGCTGTTCTCTTCTCGCAATTGTT
LOC_Os09g31200
Os.2407.1.S1_at--663--10571Chr09:18760419..18760443 (25 bp)
TTCTCTTCTCGCAATTGTTTTTCCC
LOC_Os09g31200
Os.2407.1.S1_at--553--10191Chr09:18760448..18760472 (25 bp)
TATTCTTTTTAATTGCAAACGGGAG
LOC_Os09g31200
Target Sequence 
TCTTCTTTGTCGTCACCGGTGCTCGACAAGCAGCCGCCGAGGCCGGCGGCGCCGCTGGTTGAGCCTCAGGCTCCTCTCCC
ACCGCCTGTGGAGGAGATGGCCTCCGCGCTCGCGACGGCGCCGGCGCCGGTCGCCAAGACGTCGGCGGTGAACCGGTGCT
CCAGGTGCCGGAAGCGTGTCGGCCTCACCGGGTTCCGGTGCCGGTGCGGCCACCTGTTCTGCGGCGAGCACCGGTACTCC
GACCGCCACGGCTGCAGCTACGACTACAAGTCGGCGGCGAGGGAACGCCATCGCCAGGGACAACCCGGTGGTGCGCGCGG
CCAAGATCGTTAGGTTNTGAGAGGCAAACAAAATTAAAAAAAAAATCTACTGTTTTAGCAAGAAATGGAGAAAAAAATTG
GGAATTGAAGGTGTGGATGTTATTATTATGCTGTTCTCTTCTCGCAATTGTTTTTCCCTTTTTATTCTTTTTAATTGCAA
ACGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis