Browse Element(s) Details


OsAffx.6461.1.S1_at

Description tigr:9637.m02763
TID=OsAffx.6461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3119011/11MSF1-like conserved region family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein
LOC_Os09g31150Os.51785.1.S1_at11/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.1.S1_x_at9/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.2.S1_x_at2/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.29835.1.S1_x_at1/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160OsAffx.17971.1.S1_at9/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.55225.1.S1_at5/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.57362.1.S1_at1/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31170Os.55757.1.S1_s_at11/119+18748303..18751487expressed protein
LOC_Os09g31170OsAffx.30106.1.S1_at6/119+18748303..18751487expressed protein
LOC_Os09g31180Os.9253.1.S1_s_at11/119+18751264..1875319760S ribosomal protein L9, putative, expressed
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os09g31210Os.54483.1.S1_at11/119+18768773..18770493Protein kinase domain containing protein, expressed
LOC_Os09g31220Os.17611.1.S1_at10/119+18778617..18781249expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6461.1.S1_at--460--7531Chr09:18753695..18753719 (25 bp)
GTGGCGCAAGTTCACGGACGCGGAC
LOC_Os09g31190
OsAffx.6461.1.S1_at--64--4531Chr09:18753731..18753755 (25 bp)
GCCGCTGTCGCACATCCTCGAGGTG
LOC_Os09g31190
OsAffx.6461.1.S1_at--418--7231Chr09:18753737..18753761 (25 bp)
GTCGCACATCCTCGAGGTGCACACG
LOC_Os09g31190
OsAffx.6461.1.S1_at--1127--7211Chr09:18753885..18753909 (25 bp)
GTCGAGCACACCACCGTGGACGGGC
LOC_Os09g31190
OsAffx.6461.1.S1_at--1099--591Chr09:18753921..18753945 (25 bp)
ATGCGGGTGATCTCCCGCAACGCCA
LOC_Os09g31190
OsAffx.6461.1.S1_at--775--1892Chr09:18753964..18753988 (25 bp)
ACGTCGAGGAGACCTGCAGCTACCG
LOC_Os09g31190
OsAffx.6461.1.S1_at--287--3931Chr09:18754002..18754026 (25 bp)
CGGCCCGACGAGTGGACGCTGTTCC
LOC_Os09g31190
OsAffx.6461.1.S1_at--118--4751Chr09:18754019..18754043 (25 bp)
GCTGTTCCGGCAGGAGACGAGCATT
LOC_Os09g31190
OsAffx.6461.1.S1_at--268--10671Chr09:18754023..18754047 (25 bp)
TTCCGGCAGGAGACGAGCATTCGGT
LOC_Os09g31190
OsAffx.6461.1.S1_at--387--1871Chr09:18754035..18754059 (25 bp)
ACGAGCATTCGGTGCGCGCCGCTCG
LOC_Os09g31190
OsAffx.6461.1.S1_at--904--6151Chr09:18754109..18754133 (25 bp)
GAGGTTCAGGCAGAACGCGTCCCAG
LOC_Os09g31190
Target Sequence 
GTGGCGCAAGTTCACGGACGCGGACGCGCGGGCGGCGCCGCTGTCGCACATCCTCGAGGTGCACACGCTGTCCCGCCGCG
TCGACGCTGGATCGGGGCGCATCGACGCCGTGCGCGCCATCGCGGGGCGGGCGCCGCCGCTCCCGCTCCTCCTCCGCGGC
CTCGTCGCCGCCGCCGACGTGGTGCTCTGCGTCGAGCACACCACCGTGGACGGGCCCGCACGGGCCATGCGGGTGATCTC
CCGCAACGCCAACCTCCGGGCGCTGGTGCACGTCGAGGAGACCTGCAGCTACCGCCCGCACCCGGAGCGGCCCGACGAGT
GGACGCTGTTCCGGCAGGAGACGAGCATTCGGTGCGCGCCGCTCGCTGCCGTGGCGGCCTGGGCGGCCGAGATGGTGGAG
CGGCGGTGCGCGGAGAGGTTCAGGCAGAACGCGTCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis