Browse Element(s) Details


Os.50050.1.S1_at

Description gb:AK119776.1
DB_XREF= gi:37989399
TID=Os.50050.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-H09, full insert sequence.
FL= gb:AK119776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3114011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31120Os.53322.1.S1_at11/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31120OsAffx.26754.1.S1_x_at1/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31130Os.15092.1.S1_at11/119+18714940..18717852sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein
LOC_Os09g31150Os.51785.1.S1_at11/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.1.S1_x_at9/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.2.S1_x_at2/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.29835.1.S1_x_at1/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160OsAffx.17971.1.S1_at9/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.55225.1.S1_at5/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.57362.1.S1_at1/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31170Os.55757.1.S1_s_at11/119+18748303..18751487expressed protein
LOC_Os09g31170OsAffx.30106.1.S1_at6/119+18748303..18751487expressed protein
LOC_Os09g31180Os.9253.1.S1_s_at11/119+18751264..1875319760S ribosomal protein L9, putative, expressed
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50050.1.S1_at--264--10431Chr09:18735509..18735533 (25 bp)
TTATCAAGTGTGTCTTGCCACTCCA
LOC_Os09g31140
Os.50050.1.S1_at--366--4331Chr09:18735531..18735555 (25 bp)
CCATAGCCGGGCTAGCTAGCTTAAG
LOC_Os09g31140
Os.50050.1.S1_at--183--2511Chr09:18735556..18735580 (25 bp)
AACATGAATCCCGTCTTTTCTTTCT
LOC_Os09g31140
Os.50050.1.S1_at--602--211Chr09:18735591..18735615 (25 bp)
ATTTGTTCTTTTGCTCGATCTGTCA
LOC_Os09g31140
Os.50050.1.S1_at--480--5391Chr09:18735630..18735654 (25 bp)
GAAGCATGAAGCTCCTATTCCAAAG
LOC_Os09g31140
Os.50050.1.S1_at--561--7071Chr09:18735684..18735708 (25 bp)
GTAATCGCTCATAACACGTGTACAT
LOC_Os09g31140
Os.50050.1.S1_at--385--3311Chr09:18735722..18735746 (25 bp)
CACATACACGCACACCATATTTTTA
LOC_Os09g31140
Os.50050.1.S1_at--386--5311Chr09:18735763..18735787 (25 bp)
GAAGGTCCTATTTCCAAAGCCATAT
LOC_Os09g31140
Os.50050.1.S1_at--457--5551Chr09:18735862..18735886 (25 bp)
GAAACTGGCGACCTATTTTCAAAGC
LOC_Os09g31140
Os.50050.1.S1_at--446--9231Chr09:18735942..18735966 (25 bp)
TCCTTCGATTCCATGGCTGCTAGTG
LOC_Os09g31140
Os.50050.1.S1_at--63--9071Chr09:18735965..18735989 (25 bp)
TGCTAGCTCGTACCTTTTTGTTTAG
LOC_Os09g31140
Target Sequence 
TTATCAAGTGTGTCTTGCCACTCCATAGCCGGGCTAGCTAGCTTAAGAACATGAATCCCGTCTTTTCTTTCTCTGAACAT
TAATTTGTTCTTTTGCTCGATCTGTCAGACCAATGAACGATGAAGCATGAAGCTCCTATTCCAAAGTCAATTTTTTTTAG
AAACACAGTATAAACGTAATCGCTCATAACACGTGTACATTCATCCATATGAACACATACACGCACACCATATTTTTAAT
GAACGACAAAGTATGAAGGTCCTATTTCCAAAGCCATATAATTTGAACTACAGAGATAGCTATTTTTTTTCCATTCGAAA
AAAAAAATCCATTCAATGAGATAGCTATATTTTGAAACTGGCGACCTATTTTCAAAGCCATCTAGTTTGAAACGGAGGGA
ACATGAAAGCTAGAGAGCAGTTCAGTTCAGTTCTCCTTCGATTCCATGGCTGCTAGTGCTAGCTCGTACCTTTTTGTTTA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis