Browse Element(s) Details


Os.53322.1.S1_at

Description gb:AK109548.1
DB_XREF= gi:32994757
TID=Os.53322.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F07, full insert sequence.
FL= gb:AK071962.1 gb:AK109548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3112011/11Pirin-like protein At1g50590, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31100OsAffx.30104.1.S1_at11/119+18698445..18700931hypothetical protein
LOC_Os09g31120Os.53322.1.S1_at11/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31120OsAffx.26754.1.S1_x_at1/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31130Os.15092.1.S1_at11/119+18714940..18717852sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010244biological_processresponse to low fluence blue light
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53322.1.S1_at--626--8391Chr09:18708881..18708905 (25 bp)
GGCCCTTCGTCATGAACACCGAGGA
LOC_Os09g31120
Os.53322.1.S1_at--812--6171Chr09:18708904..18708928 (25 bp)
GAGGAGATCGACATGACCATCAACG
LOC_Os09g31120
Os.53322.1.S1_at--347--2731Chr09:18708964..18708988 (25 bp)
AAGCACTGGAAGTCTCAGGCGCTGG
LOC_Os09g31120
Os.53322.1.S1_at--80--5671Chr09:18709033..18709057 (25 bp)
GACATGTCGACATATGCTCTGAACG
LOC_Os09g31120
Os.53322.1.S1_at--278--3111Chr09:18709074..18709098 (25 bp)
AATAGTTCTTTCTCTCATGATACGA
LOC_Os09g31120
Os.53322.1.S1_at--596--9691Chr09:18709145..18709169 (25 bp)
TCACTTTGTGTACATATCCGGCATA
LOC_Os09g31120
Os.53322.1.S1_at--294--4971Chr09:18709165..18709189 (25 bp)
GCATAAGGTTGCTGCTTGCTTTTCA
LOC_Os09g31120
Os.53322.1.S1_at--635--4891Chr09:18709182..18709206 (25 bp)
GCTTTTCAATTAGGCAGGTGCTTCA
LOC_Os09g31120
Os.53322.1.S1_at--758--1031Chr09:18709197..18709221 (25 bp)
AGGTGCTTCAAATCTTCGGCCCAAT
LOC_Os09g31120
Os.53322.1.S1_at--880--411Chr09:18709230..18709254 (25 bp)
ATCATGTACTTACTCCACAAGTTCA
LOC_Os09g31120
Os.53322.1.S1_at--1036--1131Chr09:18709261..18709285 (25 bp)
AGTCCTTTTGGACTTTCACTGTGTC
LOC_Os09g31120
Target Sequence 
GGCCCTTCGTCATGAACACCGAGGAGGAGATCGACATGACCATCAACGACTTCGAGTTCAGCATCAATGGCTTCGAGAAG
GCCAAGCACTGGAAGTCTCAGGCGCTGGTGGCGCTGGGCTTAGAGTAGTAGGGTGCAACCATGGGACGACACGACATGTC
GACATATGCTCTGAACGAAGGGAAAAAAAATGGAATAGTTCTTTCTCTCATGATACGAGGTTGTTTTATTTATTTGTTTT
TTTTCTCTTCCAAACAAATAGCGATCACTTTGTGTACATATCCGGCATAAGGTTGCTGCTTGCTTTTCAATTAGGCAGGT
GCTTCAAATCTTCGGCCCAATGACTAAAAATCATGTACTTACTCCACAAGTTCATAAACAAGTCCTTTTGGACTTTCACT
GTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis