Browse Element(s) Details


OsAffx.30104.1.S1_at

Description tigr:9637.m02754
TID=OsAffx.30104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3110011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31100OsAffx.30104.1.S1_at11/119+18698445..18700931hypothetical protein
LOC_Os09g31120Os.53322.1.S1_at11/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31120OsAffx.26754.1.S1_x_at1/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31130Os.15092.1.S1_at11/119+18714940..18717852sodium/dicarboxylate cotransporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30104.1.S1_at--734--9611Chr09:18700491..18700515 (25 bp)
TCATCGTTGTCATCGCTGTGTCACG
LOC_Os09g31100
OsAffx.30104.1.S1_at--805--8651Chr09:18700507..18700531 (25 bp)
TGTGTCACGGTTCACGCACAAGCCG
LOC_Os09g31100
OsAffx.30104.1.S1_at--161--2671Chr09:18700526..18700550 (25 bp)
AAGCCGTTGCCACCGCAAAAGGCGA
LOC_Os09g31100
OsAffx.30104.1.S1_at--1088--2291Chr09:18700543..18700567 (25 bp)
AAAGGCGAAATCGTGACGCACACAA
LOC_Os09g31100
OsAffx.30104.1.S1_at--376--3051Chr09:18700551..18700575 (25 bp)
AATCGTGACGCACACAATGAGGAAG
LOC_Os09g31100
OsAffx.30104.1.S1_at--187--5351Chr09:18700572..18700596 (25 bp)
GAAGACGAATCGCAAGTCCCAATCG
LOC_Os09g31100
OsAffx.30104.1.S1_at--111--3051Chr09:18700579..18700603 (25 bp)
AATCGCAAGTCCCAATCGATTCCTC
LOC_Os09g31100
OsAffx.30104.1.S1_at--202--6571Chr09:18700596..18700620 (25 bp)
GATTCCTCCCATGCTGACGGCGGTG
LOC_Os09g31100
OsAffx.30104.1.S1_at--276--6171Chr09:18700632..18700656 (25 bp)
GAGGATGACCCTTTGTTCGCGGACC
LOC_Os09g31100
OsAffx.30104.1.S1_at--873--10611Chr09:18700678..18700702 (25 bp)
TTGCCCGTGACATGGAGGCCGTAGT
LOC_Os09g31100
OsAffx.30104.1.S1_at--1098--4771Chr09:18700788..18700812 (25 bp)
GCTGCCGCCAATCATCGCTGTGAGC
LOC_Os09g31100
Target Sequence 
TCATCGTTGTCATCGCTGTGTCACGGTTCACGCACAAGCCGTTGCCACCGCAAAAGGCGAAATCGTGACGCACACAATGA
GGAAGACGAATCGCAAGTCCCAATCGATTCCTCCCATGCTGACGGCGGTGGTGATGGCGAGGAGGATGACCCTTTGTTCG
CGGACCTCCAGAAGCTCCCGCCGGACGTTGCCCGTGACATGGAGGCCGTAGTCGGCGCGGCTGAGGGGTTCCACGCGGAC
ACTGCGTGGGCCGGGGGCCTCCTAGAGCGGTGCGGCGCCATCTACATCACCGCTGCCGCTGCCGCCAATCATCGCTGTGA
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis