Browse Element(s) Details


Os.54074.1.S1_at

Description gb:AK101709.1
DB_XREF= gi:32986918
TID=Os.54074.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060L03, full insert sequence.
FL= gb:AK101709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3105011/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31100OsAffx.30104.1.S1_at11/119+18698445..18700931hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54074.1.S1_at--1048--9711Chr09:18673236..18673260 (25 bp)
TCAACCTCTGGATCGGCAGCGCCTG
LOC_Os09g31050
Os.54074.1.S1_at--675--5851Chr09:18673189..18673213 (25 bp)
GACCACTACGACAACATCTACGTCG
LOC_Os09g31050
Os.54074.1.S1_at--1039--6391Chr09:18673022..18673046 (25 bp)
GATCGTGCCATGGAGCAGCGTTGAC
LOC_Os09g31050
Os.54074.1.S1_at--927--8371Chr09:18672901..18672925 (25 bp)
GGCGAGATGCTCTACTTGCCGAGCA
LOC_Os09g31050
Os.54074.1.S1_at--1102--2051Chr09:18672888..18672912 (25 bp)
ACTTGCCGAGCATGTGGTTTCACCA
LOC_Os09g31050
Os.54074.1.S1_at--427--7871Chr09:18672873..18672897 (25 bp)
GGTTTCACCATGTGAGCCAGAGCCC
LOC_Os09g31050
Os.54074.1.S1_at--407--3891Chr09:18672815..18672839 (25 bp)
CTGGTATGACATGCAGTTTGACATT
LOC_Os09g31050
Os.54074.1.S1_at--602--131Chr09:18672793..18672817 (25 bp)
ATTAAGTATGCCTACTTCAACTTCT
LOC_Os09g31050
Os.54074.1.S1_at--493--3271Chr09:18672776..18672800 (25 bp)
CAACTTCTTGAGGTCATTGGAGATC
LOC_Os09g31050
Os.54074.1.S1_at--598--5751Chr09:18672731..18672755 (25 bp)
GACGGATGCTTTGGAAGACGATCTC
LOC_Os09g31050
Os.54074.1.S1_at--1010--171Chr09:18672682..18672706 (25 bp)
ATTTTTGCGGTAATTCTGGATCTAT
LOC_Os09g31050
Target Sequence 
TCAACCTCTGGATCGGCAGCGCCTGCTCCCAGACCTCCTTCCACAAGGACCACTACGACAACATCTACGTCGTCGTCTCC
GGCGAGAAGCACTTCCTCCTCTTGCCCCCCACCGAGCACCACCGCCTCTACGTCCGCGACTACCCCGCCGCCCACTACGC
CGCGGAAGATGAAGCGGAGCTGAGGCTTAAGCTGGAGCTGGAGGAGCCCGAGAGGATCGTGCCATGGAGCAGCGTTGACC
CCTACCCGCCGTCGCCGGAGGAGGCGGCCGCGCAGGCGTCATCCTTCCCGCTCTACTTCGAGGGGCCGAGGCCGATCCGC
TGCACGGTGCGCGCCGGCGAGATGCTCTACTTGCCGAGCATGTGGTTTCACCATGTGAGCCAGAGCCCCGGGCCGAACGG
GCTCACCATTGCAGTGAACTACTGGTATGACATGCAGTTTGACATTAAGTATGCCTACTTCAACTTCTTGAGGTCATTGG
AGATCGATGGTAGTTCGTCGAAAAAGACGGATGCTTTGGAAGACGATCTCGAGGAGACGAATGATTGAATTGAAATTTTT
GCGGTAATTCTGGATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis