Browse Element(s) Details


Os.49662.1.S1_at

Description gb:AK107051.1
DB_XREF= gi:32992260
TID=Os.49662.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D02, full insert sequence.
FL= gb:AK107051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3100011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30502OsAffx.1353.1.S1_x_at1/119+18636537..18637971transposon protein, putative, unclassified
LOC_Os09g30506Os.52062.1.S1_at11/119+18640599..18641302EF hand family protein, expressed
LOC_Os09g30510Os.53304.1.S1_at9/119+18641431..18642997UDP-glycosyltransfersase, putative, expressed
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49662.1.S1_at--748--8531Chr09:18662156..18662180 (25 bp)
TGGAGCTGTACCGTGGCCTGTTCGC
LOC_Os09g31000
Os.49662.1.S1_at--814--8731Chr09:18662162..18662186 (25 bp)
TGTACCGTGGCCTGTTCGCGAGGTT
LOC_Os09g31000
Os.49662.1.S1_at--591--8451Chr09:18662339..18662363 (25 bp)
TGGCCAAAGCTGCTTAAATTAATAT
LOC_Os09g31000
Os.49662.1.S1_at--767--3111Chr09:18662355..18662379 (25 bp)
AATTAATATACCTGAACCGGCGAGC
LOC_Os09g31000
Os.49662.1.S1_at--819--1771Chr09:18662370..18662394 (25 bp)
ACCGGCGAGCATTTAAATTTTCACA
LOC_Os09g31000
Os.49662.1.S1_at--591--3131Chr09:18662385..18662409 (25 bp)
AATTTTCACACAGCTACGATTTTAA
LOC_Os09g31000
Os.49662.1.S1_at--145--3611Chr09:18662439..18662463 (25 bp)
CATTGTTATTTGATAGCCTCTGTTG
LOC_Os09g31000
Os.49662.1.S1_at--323--4471Chr09:18662454..18662478 (25 bp)
GCCTCTGTTGAGCTATATTTCATTG
LOC_Os09g31000
Os.49662.1.S1_at--1012--5911Chr09:18662463..18662487 (25 bp)
GAGCTATATTTCATTGTTACTTGTG
LOC_Os09g31000
Os.49662.1.S1_at--109--10491Chr09:18662479..18662503 (25 bp)
TTACTTGTGTAACTGTGCTCTTTGA
LOC_Os09g31000
Os.49662.1.S1_at--706--7051Chr09:18662487..18662511 (25 bp)
GTAACTGTGCTCTTTGAGATAGACA
LOC_Os09g31000
Target Sequence 
TGGAGCTGTACCGTGGCCTGTTCGCGAGGTTCGACCGCGACGGCAATGGCGCGGTGGACCTGGAGGAGTTCCGGGCCGAG
ATGAAGGAGATGCTGCTCGCCGTCGCCAATGGCCTCGGGTTCCTGCCGGTGCAGATGGTCGTCGAGGAAGGCAGCTTTCT
CAAGGTGGCCGTCGACAGGGAGCTGGCCAAAGCTGCTTAAATTAATATACCTGAACCGGCGAGCATTTAAATTTTCACAC
AGCTACGATTTTAATTGATATATCTTGTGTTCACAATATTGATCATTGTTATTTGATAGCCTCTGTTGAGCTATATTTCA
TTGTTACTTGTGTAACTGTGCTCTTTGAGATAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis