Browse Element(s) Details


Os.52062.1.S1_at

Description gb:AK064644.1
DB_XREF= gi:32974662
TID=Os.52062.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C07, full insert sequence.
FL= gb:AK064644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3050611/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30490Os.27569.1.S2_at11/119+18617051..18617800EF hand family protein, expressed
LOC_Os09g30494Os.27691.1.S1_x_at5/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494OsAffx.19532.1.S1_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494Os.27691.2.S1_x_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30498NANA9+18633082..18634910hypothetical protein
LOC_Os09g30502OsAffx.1353.1.S1_x_at1/119+18636537..18637971transposon protein, putative, unclassified
LOC_Os09g30506Os.52062.1.S1_at11/119+18640599..18641302EF hand family protein, expressed
LOC_Os09g30510Os.53304.1.S1_at9/119+18641431..18642997UDP-glycosyltransfersase, putative, expressed
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52062.1.S1_at--285--1711Chr09:18640896..18640920 (25 bp)
ACCACGGCTTGTTCTTGCGGTTCGA
LOC_Os09g30506
Os.52062.1.S1_at--1025--10311Chr09:18641042..18641066 (25 bp)
TTTCTCAAGGTTGCTGTCGACAGAG
LOC_Os09g30506
Os.52062.1.S1_at--224--6011Chr09:18641064..18641088 (25 bp)
GAGAGCTGGCCAAAGCGGCTTGAAA
LOC_Os09g30506
Os.52062.1.S1_at--595--10711Chr09:18641083..18641107 (25 bp)
TTGAAATATACCTCAACCGGCGAGC
LOC_Os09g30506
Os.52062.1.S1_at--820--1771Chr09:18641098..18641122 (25 bp)
ACCGGCGAGCAAATTAATTTTCACA
LOC_Os09g30506
Os.52062.1.S1_at--504--3131Chr09:18641113..18641137 (25 bp)
AATTTTCACATGTCCATTTACGATT
LOC_Os09g30506
Os.52062.1.S1_at--690--3571Chr09:18641127..18641151 (25 bp)
CATTTACGATTTTGGATTGCTTCTT
LOC_Os09g30506
Os.52062.1.S1_at--297--4911Chr09:18641145..18641169 (25 bp)
GCTTCTTATTGTTCTTACTTCTTGC
LOC_Os09g30506
Os.52062.1.S1_at--746--3651Chr09:18641162..18641186 (25 bp)
CTTCTTGCATTTGTTGAGCTATACT
LOC_Os09g30506
Os.52062.1.S1_at--552--2571Chr09:18641214..18641238 (25 bp)
AACGGTACATCGATAGAACACTTGA
LOC_Os09g30506
Os.52062.1.S1_at--1070--3031Chr09:18641241..18641265 (25 bp)
AATCCTGTACCATTTTTATTTCTAT
LOC_Os09g30506
Target Sequence 
ACCACGGCTTGTTCTTGCGGTTCGACCGCNATGGCAGTGGCGCCGTCGACCTNGAGGAGTTCCGGGCGGAGATNAAGGAG
NTNTTGCTCGCTGTCGCCAATGGCCTCGGGTTCCTGCCCGTGCAGATGGTGGTCGAGGAAGGCAGCTTTCTCAAGGTTGC
TGTCGACAGAGAGCTGGCCAAAGCGGCTTGAAATATACCTCAACCGGCGAGCAAATTAATTTTCACATGTCCATTTACGA
TTTTGGATTGCTTCTTATTGTTCTTACTTCTTGCATTTGTTGAGCTATACTATGTATCGTTTTGATATTTCAGATGAAAA
CGGTACATCGATAGAACACTTGAAAAATCCTGTACCATTTTTATTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis