Browse Element(s) Details


Os.27569.1.S2_at

Description gb:AK121706.1
DB_XREF= gi:37991329
TID=Os.27569.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075F09, full insert sequence.
FL= gb:AK063923.1 gb:AK121706.1 gb:AK062351.1 gb:AK121809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3049011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30482Os.39431.1.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.9332.2.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.39431.1.S1_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482OsAffx.22452.1.S1_x_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30482Os.9332.2.S1_at1/119+18601643..18603341transposon protein, putative, unclassified
LOC_Os09g30486Os.52641.1.S1_at11/119+18610293..18611307Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os09g30490Os.27569.1.S2_at11/119+18617051..18617800EF hand family protein, expressed
LOC_Os09g30494Os.27691.1.S1_x_at5/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494OsAffx.19532.1.S1_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30494Os.27691.2.S1_x_at1/119+18625362..18630489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30498NANA9+18633082..18634910hypothetical protein
LOC_Os09g30502OsAffx.1353.1.S1_x_at1/119+18636537..18637971transposon protein, putative, unclassified
LOC_Os09g30506Os.52062.1.S1_at11/119+18640599..18641302EF hand family protein, expressed
LOC_Os09g30510Os.53304.1.S1_at9/119+18641431..18642997UDP-glycosyltransfersase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27569.1.S2_at--1020--4991Chr09:18617222..18617246 (25 bp)
GCAGGCTGTCCTACGCCGACATGGC
LOC_Os09g30490
Os.27569.1.S2_at--761--4231Chr09:18617375..18617399 (25 bp)
CCGTCGACCGTGAGGAGTTCCGCGC
LOC_Os09g30490
Os.27569.1.S2_at--308--1071Chr09:18617500..18617524 (25 bp)
AGGGAGCTCGCCAAAGCTGCCTGAT
LOC_Os09g30490
Os.27569.1.S2_at--328--2351Chr09:18617512..18617536 (25 bp)
AAAGCTGCCTGATCATCGCCATCGC
LOC_Os09g30490
Os.27569.1.S2_at--718--8371Chr09:18617545..18617569 (25 bp)
GGCGTCAGAGATTCTGCCTACAGAT
LOC_Os09g30490
Os.27569.1.S2_at--1126--2131Chr09:18617564..18617588 (25 bp)
ACAGATTTGCAGGTGTATCGAGAGA
LOC_Os09g30490
Os.27569.1.S2_at--927--511Chr09:18617580..18617604 (25 bp)
ATCGAGAGATTTTTGTAGTATTTAC
LOC_Os09g30490
Os.27569.1.S2_at--637--6111Chr09:18617606..18617630 (25 bp)
GAGTGTATACTAATCAAGTGCGTAC
LOC_Os09g30490
Os.27569.1.S2_at--572--2851Chr09:18617621..18617645 (25 bp)
AAGTGCGTACTGTCCTCTTGCTGAA
LOC_Os09g30490
Os.27569.1.S2_at--472--1651Chr09:18617656..18617680 (25 bp)
AGCCTTTCAGCTATGTAATCCGGGA
LOC_Os09g30490
Os.27569.1.S2_at--1060--7731Chr09:18617710..18617734 (25 bp)
GGTGTCAGCAATAAAATCAACGTTT
LOC_Os09g30490
Target Sequence 
GCAGGCTGTCCTACGCCGACATGGCCGGTGAGCTGATGAGCCTCCGCGTGCTGGAGACCCACTTCGGCGTCGACGGCGCC
GCCGCCACGGACGCCGAGCTCGTCGACCTGTACCGCGGCCTGTTCGCCCGGTTCGACCGCGACGGCGACGGCGCCGTCGA
CCGTGAGGAGTTCCGCGCCGAGATGAAGGAGGTGATGCTCGCCGTCGCCAGCGGCCTCGGCTTCCTCCCCGTTCAGATGG
TCGTCGAGGAAGGCAGCTTCCTCAAGAGGGCCGTCGAGAGGGAGCTCGCCAAAGCTGCCTGATCATCGCCATCGCCATCG
CCAGGCGTCAGAGATTCTGCCTACAGATTTGCAGGTGTATCGAGAGATTTTTGTAGTATTTACAGAGTGTATACTAATCA
AGTGCGTACTGTCCTCTTGCTGAAATGGCATTTCAGCCTTTCAGCTATGTAATCCGGGATGGAAAATTTTGTTTGATCTG
AATTATTTGGTGTCAGCAATAAAATCAACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27569.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis