Browse Element(s) Details


OsAffx.30103.2.S1_s_at

Description tigr:9637.m02741
TID=OsAffx.30103.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal L40e family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3101911/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30506Os.52062.1.S1_at11/119+18640599..18641302EF hand family protein, expressed
LOC_Os09g30510Os.53304.1.S1_at9/119+18641431..18642997UDP-glycosyltransfersase, putative, expressed
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30103.2.S1_s_at--871--8651Chr09:18664293..18664688 (25 bp)
TGTGGCCACACCAACCAGATAAGGC
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--242--2791Chr09:18664694..18664718 (25 bp)
AAGAGGTTTATATCCAAGACTGCCA
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--899--251Chr09:18664703..18664727 (25 bp)
ATATCCAAGACTGCCAACTGAATAA
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--255--1352Chr09:18664729..18664753 (25 bp)
AGAGTTGTCATGCATCAGTTGAGTC
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--248--411Chr09:18664742..18664766 (25 bp)
ATCAGTTGAGTCGAAGAGTCTTCCT
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--1051--5351Chr09:18664754..18664778 (25 bp)
GAAGAGTCTTCCTATTCAGTTATTA
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--480--131Chr09:18664767..18664791 (25 bp)
ATTCAGTTATTAGCTCATATGTTAG
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--21--9611Chr09:18664781..18664805 (25 bp)
TCATATGTTAGCATCAGTTGAGTCA
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--247--411Chr09:18664793..18664817 (25 bp)
ATCAGTTGAGTCAAAGAGTCTTCAT
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--700--1671Chr09:18664825..18664849 (25 bp)
AGCCTGGCTGCTTATGCTATTTCTG
LOC_Os09g31019
OsAffx.30103.2.S1_s_at--156--3851Chr09:18664832..18664856 (25 bp)
CTGCTTATGCTATTTCTGTTTGTGA
LOC_Os09g31019
Target Sequence 
TGTGGCCACACCAACCAGATAAGGCCAAAGAAGAGGTTTATATCCAAGACTGCCAACTGAATAAAAGAGTTGTCATGCAT
CAGTTGAGTCGAAGAGTCTTCCTATTCAGTTATTAGCTCATATGTTAGCATCAGTTGAGTCAAAGAGTCTTCATAAATGT
TAGCCTGGCTGCTTATGCTATTTCTGTTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30103.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis