Browse Element(s) Details


Os.4784.1.S1_at

Description gb:AK121473.1
DB_XREF= gi:37991096
TID=Os.4784.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4784 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148I04, full insert sequence.
FL= gb:AK121473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3104011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4784.1.S1_at--1109--1571Chr09:18671596..18671620 (25 bp)
AGCTCATGAGCCTCAGGGTCCTTGA
LOC_Os09g31040
Os.4784.1.S1_at--34--7711Chr09:18671611..18671635 (25 bp)
GGGTCCTTGAGAAGCATTTCGGTGT
LOC_Os09g31040
Os.4784.1.S1_at--650--191Chr09:18671626..18671650 (25 bp)
ATTTCGGTGTTGATGAGGCCGCCAT
LOC_Os09g31040
Os.4784.1.S1_at--463--4431Chr09:18671646..18671670 (25 bp)
GCCATGAGCTCCGATGAACTCGTGG
LOC_Os09g31040
Os.4784.1.S1_at--895--2531Chr09:18671662..18671686 (25 bp)
AACTCGTGGAGATGTACCGTGGCTT
LOC_Os09g31040
Os.4784.1.S1_at--980--1771Chr09:18671677..18671701 (25 bp)
ACCGTGGCTTGTATGCGCGGTTCGA
LOC_Os09g31040
Os.4784.1.S1_at--1123--6691Chr09:18671786..18671810 (25 bp)
GTTCCTGCCTGTTCAGATGGTGGTG
LOC_Os09g31040
Os.4784.1.S1_at--1084--911Chr09:18671857..18671881 (25 bp)
AGGCAGCCTGAAGCACAACAGTTTT
LOC_Os09g31040
Os.4784.1.S1_at--1111--4851Chr09:18671961..18671985 (25 bp)
GCTAGTTATTATTGGCACACGGCAG
LOC_Os09g31040
Os.4784.1.S1_at--775--2291Chr09:18672044..18672068 (25 bp)
AAATGTTGTGCGGAATGCTCGTGAA
LOC_Os09g31040
Os.4784.1.S1_at--251--4771Chr09:18672060..18672084 (25 bp)
GCTCGTGAAATCCTACATTTGGGAA
LOC_Os09g31040
Target Sequence 
AGCTCATGAGCCTCAGGGTCCTTGAGAAGCATTTCGGTGTTGATGAGGCCGCCATGAGCTCCGATGAACTCGTGGAGATG
TACCGTGGCTTGTATGCGCGGTTCGACCACGACGGNCAATGGCACGGTGGACTTGGAGGAGTTCCGGGCCGAGATGAAGG
AGGTGATGCTCGCCGTCGCCAATGGNCTCGGGTTCCTGCCTGTTCAGATGGTGGTGGAGGAAGGCAGCTTCCTCAAGGTG
GCTGTGGACAGGGAGCTGGCCAAGGCAGCCTGAAGCACAACAGTTTTGCAGCAATATTTTTTTTTACATGTCTACTATTT
ATAATTTTGTCATTGCATTCTNANNNNNGATTGAGCTATTTCATTTGCTAGTTATTATTGGCACACGGCAGAAACCAGGN
GGTTGTAATACTGTACTTTACATATCACACAAGCTAGCTGAACAAATGGAAATGTTGTGCGGAATGCTCGTGAAATCCTA
CATTTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis