Browse Element(s) Details


OsAffx.6459.1.S1_at

Description tigr:9637.m02748
TID=OsAffx.6459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3106011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30970OsAffx.10056.1.S1_x_at1/119+18653492..18654142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g30980NANA9+18656658..18658129UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31100OsAffx.30104.1.S1_at11/119+18698445..18700931hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6459.1.S1_at--426--8351Chr09:18674397..18674421 (25 bp)
GGCGGCCGTGAGCACGACGGTCGTC
LOC_Os09g31060
OsAffx.6459.1.S1_at--405--4591Chr09:18674499..18674523 (25 bp)
GCGCACTCGTGGATGCGTGCCCTGT
LOC_Os09g31060
OsAffx.6459.1.S1_at--285--8571Chr09:18674508..18674532 (25 bp)
TGGATGCGTGCCCTGTCCCTCTCGG
LOC_Os09g31060
OsAffx.6459.1.S1_at--884--7792Chr09:18674548..18674572 (25 bp)
GGTCGCTCAGCAGCTTCGCCTGCAG
LOC_Os09g31060
OsAffx.6459.1.S1_at--893--4271Chr09:18674566..18674590 (25 bp)
CCTGCAGCCGCGTGTGGCTTGTCCG
LOC_Os09g31060
OsAffx.6459.1.S1_at--716--1571Chr09:18674610..18674634 (25 bp)
AGCGACGGGAACGACTTGTTGCACG
LOC_Os09g31060
OsAffx.6459.1.S1_at--173--5751Chr09:18674613..18674637 (25 bp)
GACGGGAACGACTTGTTGCACGTCT
LOC_Os09g31060
OsAffx.6459.1.S1_at--870--9431Chr09:18674698..18674722 (25 bp)
TCGGTGCCATCGACGTGGCCACGCG
LOC_Os09g31060
OsAffx.6459.1.S1_at--858--8431Chr09:18674714..18674795 (25 bp)
GGCCACGCGGGTGACGACAGGTGAT
LOC_Os09g31060
OsAffx.6459.1.S1_at--896--1671Chr09:18675168..18675192 (25 bp)
AGCCTCGTCGCCTGGGAGCTCGCTG
LOC_Os09g31060
OsAffx.6459.1.S1_at--440--9331Chr09:18675175..18675199 (25 bp)
TCGCCTGGGAGCTCGCTGCGGAGGA
LOC_Os09g31060
Target Sequence 
GGCGGCCGTGAGCACGACGGTCGTCGTGCCCGTCTCGCCCCTGTGCCGGCGCATGTGGCCGCCGAGCGCCTGCCCCATGG
AGAACTCGACCCCGCGCACGCGGCGCACTCGTGGATGCGTGCCCTGTCCCTCTCGGCCGCTGCGGCGGCGGGGTCGCTCA
GCAGCTTCGCCTGCAGCCGCGTGTGGCTTGTCCGGTGCCCGCCCAGCCCCTGGAGCGACGGGAACGACTTGTTGCACGTC
TTGCACTCGAACACCCCCTCCGCCGCCAGCGCCCTGCTGCCCGCCGGCGTCGACGACGACGTCGGTGCCATCGACGTGGC
CACGCGGGTGACGACAGGTGATGAGCAGCCTCGTCGCGGCGACGCCGAGCGCCTCCGGGTGATGAGCAGCCTCGTCGCCT
GGGAGCTCGCTGCGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis