Browse Element(s) Details


Os.50006.1.S2_at

Description gb:AK102983.1
DB_XREF= gi:32988192
TID=Os.50006.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116A02, full insert sequence.
FL= gb:AK102983.1 gb:AK100330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3109011/11HECT-domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31100OsAffx.30104.1.S1_at11/119+18698445..18700931hypothetical protein
LOC_Os09g31120Os.53322.1.S1_at11/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31120OsAffx.26754.1.S1_x_at1/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31130Os.15092.1.S1_at11/119+18714940..18717852sodium/dicarboxylate cotransporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0005622cellular_componentintracellular
GO:0005739cellular_componentmitochondrion
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50006.1.S2_at--150--2531Chr09:18687258..18687282 (25 bp)
AACTTTGAAGGTATGCGACTCTGCT
LOC_Os09g31090
Os.50006.1.S2_at--933--1411Chr09:18687159..18687183 (25 bp)
AGAAACCGGTGTCTCAGCAGCTGAC
LOC_Os09g31090
Os.50006.1.S2_at--972--6491Chr09:18687130..18687154 (25 bp)
GATATGGACCATACTCTGCCTGAAC
LOC_Os09g31090
Os.50006.1.S2_at--1107--10111Chr09:18687063..18687087 (25 bp)
TATGTTGACAACTACACCCGGTGGA
LOC_Os09g31090
Os.50006.1.S2_at--414--9431Chr09:18687037..18687061 (25 bp)
TCGGATGCCTAGTTGATGTGTATTC
LOC_Os09g31090
Os.50006.1.S2_at--1102--5971Chr09:18686984..18687008 (25 bp)
GAGAAATTCCATACCAAATCCCGCT
LOC_Os09g31090
Os.50006.1.S2_at--831--3031Chr09:18686968..18686992 (25 bp)
AATCCCGCTGAAACTCTGGCAAATT
LOC_Os09g31090
Os.50006.1.S2_at--154--3131Chr09:18686947..18686971 (25 bp)
AATTTCCACGGGATGCTTGTGCACG
LOC_Os09g31090
Os.50006.1.S2_at--271--431Chr09:18686877..18686901 (25 bp)
ATCATTGCTGCACTCTAATCATCTA
LOC_Os09g31090
Os.50006.1.S2_at--192--3591Chr09:18686842..18686866 (25 bp)
CATTTTGATTTCACTCATCTTCCTC
LOC_Os09g31090
Os.50006.1.S2_at--295--3011Chr09:18686788..18686812 (25 bp)
AATGCAGTTACTTGGCAGCGCTGAA
LOC_Os09g31090
Target Sequence 
AACTTTGAAGGTATGCGACTCTGCTAATGTGAAGTTAAAACTCGGATATGCTTTGCTGTTTAGTACCAGCAGGCAGCAGA
AATTTTCTGGGAATCAGCCAGAAACCGGTGTCTCAGCAGCTGACAAGTGATATGGACCATACTCTGCCTGAACATATGGA
TTCCAACGATGTCTTTGGTATATGAATCACAATTATATGTTGACAACTACACCCGGTGGAATCGGATGCCTAGTTGATGT
GTATTCACACCTTTCAAATGTTTTGCATCTGTGAGAGAAATTCCATACCAAATCCCGCTGAAACTCTGGCAAATTTCCAC
GGGATGCTTGTGCACGGTTGCACCTACAGTTTCTCCACCTTTGCGAGCCGCCGATGGAGAGATCATTGCTGCACTCTAAT
CATCTATCCTCTGATTCATTTTGATTTCACTCATCTTCCTCCCCTCTTCAACATTTTGTACAACCAATGAAATGCAGTTA
CTTGGCAGCGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50006.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis