Browse Element(s) Details


Os.15092.1.S1_at

Description gb:AK067836.1
DB_XREF= gi:32977854
TID=Os.15092.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123J03, full insert sequence.
FL= gb:AK105756.1 gb:AK067836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3113011/11sodium/dicarboxylate cotransporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31100OsAffx.30104.1.S1_at11/119+18698445..18700931hypothetical protein
LOC_Os09g31120Os.53322.1.S1_at11/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31120OsAffx.26754.1.S1_x_at1/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31130Os.15092.1.S1_at11/119+18714940..18717852sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein
LOC_Os09g31150Os.51785.1.S1_at11/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.1.S1_x_at9/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.2.S1_x_at2/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.29835.1.S1_x_at1/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160OsAffx.17971.1.S1_at9/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.55225.1.S1_at5/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.57362.1.S1_at1/119+18739532..18743004Glutamate receptor 3.3 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0006835biological_processdicarboxylic acid transport
GO:0015743biological_processmalate transport
GO:0051453biological_processregulation of cellular pH
GO:0005773cellular_componentvacuole
GO:0015140molecular_functionmalate transporter activity
GO:0017153molecular_functionsodium:dicarboxylate symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15092.1.S1_at--209--10511Chr09:18717315..18717339 (25 bp)
TTCAGCACGGGCTACATCAGCATCA
LOC_Os09g31130
Os.15092.1.S1_at--288--2931Chr09:18717339..18717363 (25 bp)
AAGGACATGGTGATCGCCGGAACGC
LOC_Os09g31130
Os.15092.1.S1_at--982--4411Chr09:18717354..18717378 (25 bp)
GCCGGAACGCCCCTGAAAATTGTCG
LOC_Os09g31130
Os.15092.1.S1_at--213--9891Chr09:18717400..18717589 (25 bp)
TACTGCCAACGTTAGGATCCGTCGT
LOC_Os09g31130
Os.15092.1.S1_at--3--10091Chr09:18717578..18717601 (24 bp)
TAGGATCCGTCGTTTTTGGCATGGA
LOC_Os09g31130
Os.15092.1.S1_at--265--6931Chr09:18717662..18717686 (25 bp)
GTAGGCTGTAGGTTATTACGTGGAT
LOC_Os09g31130
Os.15092.1.S1_at--1025--10071Chr09:18717706..18717730 (25 bp)
TAGGTTGTATTGTTGTACAGCGTGT
LOC_Os09g31130
Os.15092.1.S1_at--667--7031Chr09:18717720..18717744 (25 bp)
GTACAGCGTGTAGTCAATCCCATTG
LOC_Os09g31130
Os.15092.1.S1_at--280--3051Chr09:18717735..18717759 (25 bp)
AATCCCATTGTCTTGCCTCATGAAA
LOC_Os09g31130
Os.15092.1.S1_at--1027--7691Chr09:18717766..18717790 (25 bp)
GGGTCATATTCTTTGAGTCAATATA
LOC_Os09g31130
Os.15092.1.S1_at--812--6051Chr09:18717806..18717830 (25 bp)
GAGTTGTTCCATGTTAATATATCTT
LOC_Os09g31130
Target Sequence 
TTCAGCACGGGCTACATCAGCATCAAGGACATGGTGATCGCCGGAACGCCCCTGAAAATTGTCGGGGTTGCAGCTCTCAC
CATCCTACTGCCAACGTTAGGATCCGTCGTTTTTGGCATGGATCAGAAGCTATAGAAACTTTAGTCAAAGTTCAATTGGA
TGTTTTTTGAATATTTCAATTTGTAGGCTGTAGGTTATTACGTGGATAATATAGTAGTAAGTTGCATAGGTTGTATTGTT
GTACAGCGTGTAGTCAATCCCATTGTCTTGCCTCATGAAAAACATGGGGTCATATTCTTTGAGTCAATATAGNGNNTTGT
ATTTGTATTGAGTTGTTCCATGTTAATATATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis