Browse Element(s) Details


OsAffx.17971.1.S1_at

Description tigr:9637.m02759
TID=OsAffx.17971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g311609/11Glutamate receptor 3.3 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31130Os.15092.1.S1_at11/119+18714940..18717852sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein
LOC_Os09g31150Os.51785.1.S1_at11/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.1.S1_x_at9/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.2.S1_x_at2/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.29835.1.S1_x_at1/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160OsAffx.17971.1.S1_at9/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.55225.1.S1_at5/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.57362.1.S1_at1/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31170Os.55757.1.S1_s_at11/119+18748303..18751487expressed protein
LOC_Os09g31170OsAffx.30106.1.S1_at6/119+18748303..18751487expressed protein
LOC_Os09g31180Os.9253.1.S1_s_at11/119+18751264..1875319760S ribosomal protein L9, putative, expressed
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0006883biological_processsodium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0030007biological_processpotassium ion homeostasis
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17971.1.S1_at--553--2791Chr09:18742538..18742562 (25 bp)
AAGAGGTGGTGATTCTATAAGAAGC
LOC_Os09g31160
OsAffx.17971.1.S1_at--266--5391Chr09:18742518..18742542 (25 bp)
GAAGCTGTAACCATTGGAAGCTAGA
LOC_Os09g31160
OsAffx.17971.1.S1_at--564--1571Chr09:18742500..18742524 (25 bp)
AGCTAGAATTAAGGGCATGGTCGTT
LOC_Os09g31160
OsAffx.17971.1.S1_at--1026--9771Chr09:18742491..18742515 (25 bp)
TAAGGGCATGGTCGTTTCAACAACT
LOC_Os09g31160
OsAffx.17971.1.S1_at--703--8271Chr09:18742488..18742511 (24 bp)
GGCATGGTCGTTTCAACAACTCAGT
LOC_Os09g31160
OsAffx.17971.1.S1_at--68--8611Chr09:18742488..18742507 (20 bp)
TGGTCGTTTCAACAACTCAGTACAT
LOC_Os09g31160
OsAffx.17971.1.S1_at--730--2451NONE
AACTCAGTACATGCAATGCACAGGG
NONE
OsAffx.17971.1.S1_at--91--671NONE
ATGCAATGCACAGGGTCTGGACGGC
NONE
OsAffx.17971.1.S1_at--1103--4851Chr09:18739618..18739867 (25 bp)
GCTAGAGAGCGAGAAAATTTTGCCT
LOC_Os09g31160
OsAffx.17971.1.S1_at--134--2251Chr09:18739604..18739628 (25 bp)
AAATTTTGCCTATCTCCTATTTGAC
LOC_Os09g31160
OsAffx.17971.1.S1_at--600--9251Chr09:18739563..18739587 (25 bp)
TCCTCGACTGCTCTTATGACGTTTG
LOC_Os09g31160
Target Sequence 
AAGAGGTGGTGATTCTATAAGAAGCTGTAACCATTGGAAGCTAGAATTAAGGGCATGGTCGTTTCAACAACTCAGTACAT
GCAATGCACAGGGTCTGGACGGCCTCATCGCCAGCTCTGACCCCATCGGCTTCCAGGTCGGCTCCTTCGCCAAGAGCTAC
CTCATGCAGGAGCTGGGCGTGCCTGAGTCCCGCCTCCGGGAGCTCGCCATCACCGACTACTCCTCCAGCCTGCAGAGCGG
CGTCGTGGCGGCCATCGTCGACGAGCTGCCATACGTGGAGCTCTTCCTCTCCATCAACTGCCAGTTCAGGACAGTGGGGC
AGGAGTTCACAAAGAGCGGATGGGGATTCGCTTTCCAGCGCGACTCCCCTCTGGCCGTGGACCTTTCGACGGCTGCCGAG
GAGGAGGAGGCTAGAGAGCGAGAAAATTTTGCCTATCTCCTATTTGACCGATGTCATCCGCCACTCCTCGACTGCTCTTA
TGACGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis