Browse Element(s) Details

Os.9253.1.S1_s_at

Description

gb:AK064936.1
DB_XREF= gi:32974954
TID=Os.9253.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9253 (NCBI UniGene Cluster)
UG_TITLE=Rice (YK426) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P02, full insert sequence.
FL= gb:D83527.1 gb:AY323481.1 gb:AK064936.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g31180	11/11	60S ribosomal protein L9, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g31140	Os.50050.1.S1_at	11/11	9	+	18734064..18736064	expressed protein
LOC_Os09g31140	OsAffx.17417.1.S1_x_at	2/11	9	+	18734064..18736064	expressed protein
LOC_Os09g31150	Os.51785.1.S1_at	11/11	9	+	18737733..18738395	TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150	OsAffx.17417.1.S1_x_at	9/11	9	+	18737733..18738395	TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150	OsAffx.17417.2.S1_x_at	2/11	9	+	18737733..18738395	TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150	OsAffx.29835.1.S1_x_at	1/11	9	+	18737733..18738395	TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160	OsAffx.17971.1.S1_at	9/11	9	+	18739532..18743004	Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160	Os.55225.1.S1_at	5/11	9	+	18739532..18743004	Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160	Os.57362.1.S1_at	1/11	9	+	18739532..18743004	Glutamate receptor 3.3 precursor, putative
LOC_Os09g31170	Os.55757.1.S1_s_at	11/11	9	+	18748303..18751487	expressed protein
LOC_Os09g31170	OsAffx.30106.1.S1_at	6/11	9	+	18748303..18751487	expressed protein
LOC_Os09g31180	Os.9253.1.S1_s_at	11/11	9	+	18751264..18753197	60S ribosomal protein L9, putative, expressed
LOC_Os09g31190	OsAffx.6461.1.S1_at	11/11	9	+	18753630..18754187	MSF1-like conserved region family protein
LOC_Os09g31200	Os.2407.1.S1_at	11/11	9	+	18759705..18760622	Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os09g31210	Os.54483.1.S1_at	11/11	9	+	18768773..18770493	Protein kinase domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9253.1.S1_s_at--420--993	1	Chr09:18751712..18751736 (25 bp)	TACGTGAGCGACAAGGGTACCATCA	LOC_Os09g31180
Os.9253.1.S1_s_at--1162--891	1	Chr09:18751708..18751732 (25 bp)	TGAGCGACAAGGGTACCATCACAGA	LOC_Os09g31180
Os.9253.1.S1_s_at--279--411	1	Chr09:18751704..18751728 (25 bp)	CGACAAGGGTACCATCACAGAGGAT	LOC_Os09g31180
Os.9253.1.S1_s_at--979--37	1	Chr09:18751691..18751715 (25 bp)	ATCACAGAGGATGCGTAAACTCCTA	LOC_Os09g31180
Os.9253.1.S1_s_at--594--213	1	Chr09:18751688..18751712 (25 bp)	ACAGAGGATGCGTAAACTCCTATCT	LOC_Os09g31180
Os.9253.1.S1_s_at--937--717	1	Chr09:18751625..18751649 (25 bp)	GTCTGATCATCCTCTGAGTTGCAAT	LOC_Os09g31180
Os.9253.1.S1_s_at--772--961	1	Chr09:18751619..18751643 (25 bp)	TCATCCTCTGAGTTGCAATTTTCTG	LOC_Os09g31180
Os.9253.1.S1_s_at--1141--925	1	Chr09:18751616..18751640 (25 bp)	TCCTCTGAGTTGCAATTTTCTGAGA	LOC_Os09g31180
Os.9253.1.S1_s_at--148--387	1	Chr09:18751612..18751636 (25 bp)	CTGAGTTGCAATTTTCTGAGAGACT	LOC_Os09g31180
Os.9253.1.S1_s_at--40--667	1	Chr09:18751608..18751632 (25 bp)	GTTGCAATTTTCTGAGAGACTGAAT	LOC_Os09g31180
Os.9253.1.S1_s_at--237--565	1	Chr09:18751484..18751508 (25 bp)	GACAGTTTACTGGAAGCATTCGTGG	LOC_Os09g31180

Target Sequence

TACGTGAGCGACAAGGGTACCATCACAGAGGATGCGTAAACTCCTATCTTCACCTAGTATCATGAAGTGCTGTTTCTTGT
CTCCCGTGTCTGATCATCCTCTGAGTTGCAATTTTCTGAGAGACTGAATTTTGTAATGGTGGGTTATTTAGGATGTAATG
GAGCATGGTATCTTATCCTACATATTGTTTCATGTTTGCGATTATGAAGTCTATTTATCATCCCCTAAAGACAGTTTACT
GGAAGCATTCGTGG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis