Browse Element(s) Details


Os.55757.1.S1_s_at

Description gb:AK108749.1
DB_XREF= gi:32993958
TID=Os.55757.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-F03, full insert sequence.
FL= gb:AK108749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g31140Os.50050.1.S1_at11/119+18734064..18736064expressed protein
LOC_Os09g31140OsAffx.17417.1.S1_x_at2/119+18734064..18736064expressed protein
LOC_Os09g31150Os.51785.1.S1_at11/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.1.S1_x_at9/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.17417.2.S1_x_at2/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31150OsAffx.29835.1.S1_x_at1/119+18737733..18738395TRANSPARENT TESTA 1 protein, putative, expressed
LOC_Os09g31160OsAffx.17971.1.S1_at9/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.55225.1.S1_at5/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31160Os.57362.1.S1_at1/119+18739532..18743004Glutamate receptor 3.3 precursor, putative
LOC_Os09g31170Os.55757.1.S1_s_at11/119+18748303..18751487expressed protein
LOC_Os09g31170OsAffx.30106.1.S1_at6/119+18748303..18751487expressed protein
LOC_Os09g31180Os.9253.1.S1_s_at11/119+18751264..1875319760S ribosomal protein L9, putative, expressed
LOC_Os09g31190OsAffx.6461.1.S1_at11/119+18753630..18754187MSF1-like conserved region family protein
LOC_Os09g31200Os.2407.1.S1_at11/119+18759705..18760622Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed
LOC_Os09g31210Os.54483.1.S1_at11/119+18768773..18770493Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55757.1.S1_s_at--436--3971Chr09:18748581..18748605 (25 bp)
CGGGAGCCTGTATCTCGACGAGGAC
LOC_Os09g31170
Os.55757.1.S1_s_at--714--8751Chr09:18748589..18748613 (25 bp)
TGTATCTCGACGAGGACAACTCCCC
LOC_Os09g31170
Os.55757.1.S1_s_at--91--531Chr09:18750938..18750962 (25 bp)
ATCGACGGCGAATGGAGCGACAAGA
LOC_Os09g31170
Os.55757.1.S1_s_at--306--8031Chr09:18750996..18751020 (25 bp)
GGAGTCGCCCAAACACCGGGAGAGA
LOC_Os09g31170
Os.55757.1.S1_s_at--960--4391Chr09:18751089..18751113 (25 bp)
GCCACGTCTCCTACGACGACGGTTT
LOC_Os09g31170
Os.55757.1.S1_s_at--873--9531Chr09:18751119..18751143 (25 bp)
TCTACTAGACGCACTCTCTCTTAAG
LOC_Os09g31170
Os.55757.1.S1_s_at--308--5111Chr09:18751129..18751153 (25 bp)
GCACTCTCTCTTAAGTACAGCGACG
LOC_Os09g31170
Os.55757.1.S1_s_at--1144--1211Chr09:18751107..18751131 (25 bp)
ACGGTTTCACCCTCTACTAGACGCA
LOC_Os09g31170
Os.55757.1.S1_s_at--140--5331Chr09:18751200..18751224 (25 bp)
GAAGTCCCCAAAAAGCATTCGCAAT
LOC_Os09g31170
Os.55757.1.S1_s_at--994--91Chr09:18751216..18751240 (25 bp)
ATTCGCAATGTTGATTCTGTACGTC
LOC_Os09g31170
Os.55757.1.S1_s_at--556--7111Chr09:18751238..18751262 (25 bp)
GTCAGTGTCAGATCAGTAGTGCGGA
LOC_Os09g31170
Target Sequence 
CGGGAGCCTGTATCTCGACGAGGACAACTCCCCCACCGACTGCGCCTTCCACGGCCACGTCACAGGGGAGAAGGGGTTGT
TCTCGCTGTCGCCGCCGCACCAGGGGATCGACGGCGAATGGAGCGACAAGAGCGGGGTGATCGTGTACAGGTGGAACGAC
AGGGGGAGTCGCCCAAACACCGGGAGAGACAACTGGAAGGGGAGGTGGAGCTGCTGCCAGGAGCGCGACGAGGGCGCGCC
CCCCTGCCGCCGCGGACGCCACGTCTCCTACGACGACGGTTTCACCCTCTACTAGACGCACTCTCTCTTAAGTACAGCGA
CGGTTTCACCCTCTACTAGACGCACTCTCTACAGCGAGAATGTGAGAGGAAGTCCCCAAAAAGCATTCGCAATGTTGATT
CTGTACGTCAGTGTCAGATCAGTAGTGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55757.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis