Browse Element(s) Details


Os.6004.1.S1_a_at

Description gb:AK060258.1
DB_XREF= gi:32970276
TID=Os.6004.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative callose synthase (OJ1263H11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-E12, full insert sequence.
FL= gb:AK069531.1 gb:AK059373.1 gb:AK060258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0275610/111,3-beta-glucan synthase component bgs3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02756Os.6004.1.S1_a_at10/113+1045101..10540181,3-beta-glucan synthase component bgs3, putative, expressed
LOC_Os03g02762Os.6004.2.S2_at11/113+1054495..1057604expressed protein
LOC_Os03g02762Os.6004.2.S1_at11/113+1054495..1057604expressed protein
LOC_Os03g02770Os.6004.3.S1_at11/113+1056223..1057599expressed protein
LOC_Os03g02780NANA3+1059144..1059692Histone H4, putative, expressed
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6004.1.S1_a_at--1071--8671Chr03:1052766..1052790 (25 bp)
TGTGTTTGCTGCCATCTTAGCATTT
LOC_Os03g02756
Os.6004.1.S1_a_at--202--9111Chr03:1052772..1052796 (25 bp)
TGCTGCCATCTTAGCATTTGTGCCA
LOC_Os03g02756
Os.6004.1.S1_a_at--50--8051NONE
GGAGTTCTTTCGATCGCTGTGGCGT
NONE
Os.6004.1.S1_a_at--453--3891Chr03:1053475..1053499 (25 bp)
CTGTGGCGTGGAAACCTATTGTGAA
LOC_Os03g02756
Os.6004.1.S1_a_at--314--10091Chr03:1053505..1053529 (25 bp)
TAGGTCTATGGAAAACAGTGCGCTC
LOC_Os03g02756
Os.6004.1.S1_a_at--177--8851Chr03:1053562..1053586 (25 bp)
TGATCATTTTTGTCCCGATAGCCAT
LOC_Os03g02756
Os.6004.1.S1_a_at--500--6491Chr03:1053578..1053602 (25 bp)
GATAGCCATCTTTTCCTGGTTTCCT
LOC_Os03g02756
Os.6004.1.S1_a_at--108--10391Chr03:1053588..1053612 (25 bp)
TTTTCCTGGTTTCCTTTCATATCCA
LOC_Os03g02756
Os.6004.1.S1_a_at--812--10291Chr03:1053597..1053621 (25 bp)
TTTCCTTTCATATCCACCTTCCAGA
LOC_Os03g02756
Os.6004.1.S1_a_at--789--5791Chr03:1053620..1053644 (25 bp)
GACCCGACTTCTATTTAACCAGGCT
LOC_Os03g02756
Os.6004.1.S1_a_at--1022--3471Chr03:1053639..1053663 (25 bp)
CAGGCTTTCAGCAGAGGTTTGGAGA
LOC_Os03g02756
Target Sequence 
TGTGTTTGCTGCCATCTTAGCATTTGTGCCAACTGGCTGGGGAGTTCTTTCGATCGCTGTGGCGTGGAAACCTATTGTGA
AGAAACTAGGTCTATGGAAAACAGTGCGCTCNCTAGCTCGNCTGTACGATGCTGGCACAGGAATGATCATTTTTGTCCCG
ATAGCCATCTTTTCCTGGTTTCCTTTCATATCCACCTTCCAGACCCGACTTCTATTTAACCAGGCTTTCAGCAGAGGTTT
GGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6004.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis