Browse Element(s) Details


Os.6004.2.S1_at

Description gb:AK105249.1
DB_XREF= gi:32990458
TID=Os.6004.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative callose synthase (OJ1263H11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B06, full insert sequence.
FL= gb:AK119410.1 gb:AK105249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0276211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02756Os.6004.1.S1_a_at10/113+1045101..10540181,3-beta-glucan synthase component bgs3, putative, expressed
LOC_Os03g02762Os.6004.2.S2_at11/113+1054495..1057604expressed protein
LOC_Os03g02762Os.6004.2.S1_at11/113+1054495..1057604expressed protein
LOC_Os03g02770Os.6004.3.S1_at11/113+1056223..1057599expressed protein
LOC_Os03g02780NANA3+1059144..1059692Histone H4, putative, expressed
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6004.2.S1_at--946--8091Chr03:1056001..1056025 (25 bp)
GGACCATGTGATTTCCTGCAGAAAA
LOC_Os03g02762
Os.6004.2.S1_at--999--2331Chr03:1056028..1056052 (25 bp)
AAAGACAGTCACTAGGCAAAGCCAA
LOC_Os03g02762
Os.6004.2.S1_at--668--5131Chr03:1056043..1056067 (25 bp)
GCAAAGCCAAACAATCGTACCACTG
LOC_Os03g02762
Os.6004.2.S1_at--761--8571Chr03:1056066..1056090 (25 bp)
TGGATTGCCACATTGCTTCCTTGGA
LOC_Os03g02762
Os.6004.2.S1_at--1152--4891Chr03:1056080..1056104 (25 bp)
GCTTCCTTGGATTTTAACTCCAGTT
LOC_Os03g02762
Os.6004.2.S1_at--641--1071Chr03:1056168..1056192 (25 bp)
AGGGACATTACTTATCTACAGGATT
LOC_Os03g02762
Os.6004.2.S1_at--483--8671Chr03:1056316..1056340 (25 bp)
TGTGTGACACTGTTTTCCTTTTCCA
LOC_Os03g02762
Os.6004.2.S1_at--549--6931Chr03:1056382..1056406 (25 bp)
GTAGGAAATCACATTCACAGGCGAA
LOC_Os03g02762
Os.6004.2.S1_at--830--9691Chr03:1056396..1056420 (25 bp)
TCACAGGCGAAATTTCTGCTCGAAA
LOC_Os03g02762
Os.6004.2.S1_at--465--2231Chr03:1056429..1056453 (25 bp)
ACAAGGAGGCACTCTTGCCTGACCA
LOC_Os03g02762
Os.6004.2.S1_at--105--671Chr03:1056565..1056589 (25 bp)
ATGAATCTTGTCTTGATGTCCTCTC
LOC_Os03g02762
Target Sequence 
GGACCATGTGATTTCCTGCAGAAAAAAAAAGACAGTCACTAGGCAAAGCCAAACAATCGTACCACTGGATTGCCACATTG
CTTCCTTGGATTTTAACTCCAGTTTCGGTAGTTTTTTCCTACTGAAGGTAGACAGAATTTGGTACTTCTATGTGCAAATT
CTTTGATAGGGACATTACTTATCTACAGGATTGCAGTACAAATGAAGATGAGTGGAACAAGTACTTGAATATGCAAATTC
TTTGATAGGAAAATTACTTGTGTTCCATACTGCCATTACATTCAGCCTGTAGATGGTTAAGGACAGGTGAACATTTGTGT
GACACTGTTTTCCTTTTCCATCACTGATTAGAATAGTGAATCNGTGTTGAAGTGTAATGTGGTAGGAAATCACATTCACA
GGCGAAATTTCTGCTCGAAAAATAATTCACAAGGAGGCACTCTTGCCTGACCATTCTGCTTACACTAGAGTTATCAAAGA
TTTGCACAAGATTGGCAAGGGCGATCTGGATGCTGAATTGAAGTTGATTTTTCAGAAGCTCACTGTACATGCAGAATCAG
CACAATGAATCTTGTCTTGATGTCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6004.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis