Browse Element(s) Details


Os.23229.1.S1_at

Description gb:AK110743.1
DB_XREF= gi:32995952
TID=Os.23229.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F10, full insert sequence.
FL= gb:AK110743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0283011/11LEM3 family/CDC50 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02762Os.6004.2.S2_at11/113+1054495..1057604expressed protein
LOC_Os03g02762Os.6004.2.S1_at11/113+1054495..1057604expressed protein
LOC_Os03g02770Os.6004.3.S1_at11/113+1056223..1057599expressed protein
LOC_Os03g02780NANA3+1059144..1059692Histone H4, putative, expressed
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02850Os.26571.1.S1_at10/113+1098132..1102122tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g02860Os.20163.1.S1_at11/113+1103313..1105401copper chaperone, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23229.1.S1_at--584--8771Chr03:1082757..1082781 (25 bp)
TGTTTGGATGAGAACCGCTGCCCTC
LOC_Os03g02830
Os.23229.1.S1_at--199--9751Chr03:1082625..1082649 (25 bp)
TAAAGCGTTGGTCCTTTCAACTACT
LOC_Os03g02830
Os.23229.1.S1_at--1016--3251Chr03:1082608..1082632 (25 bp)
CAACTACTTCTTGGATTGGAGGCAA
LOC_Os03g02830
Os.23229.1.S1_at--1016--4951Chr03:1082564..1082588 (25 bp)
GCATATCTGACTATCGGAGGCCTAT
LOC_Os03g02830
Os.23229.1.S1_at--238--8011Chr03:1082549..1082573 (25 bp)
GGAGGCCTATGCATTTTCCTTGCAG
LOC_Os03g02830
Os.23229.1.S1_at--501--3211Chr03:1081488..1081510 (23 bp)
CAAGGACTCTTGGAGACCCCTCGTA
LOC_Os03g02830
Os.23229.1.S1_at--884--1791Chr03:1081473..1081497 (25 bp)
ACCCCTCGTACTTGTCATGGAATAG
LOC_Os03g02830
Os.23229.1.S1_at--610--291Chr03:1081452..1081476 (25 bp)
ATAGAGATACTCCAGACCGTCCAAA
LOC_Os03g02830
Os.23229.1.S1_at--260--731Chr03:1081327..1081351 (25 bp)
ATGATTCCTATCTAACGTGTTTGTG
LOC_Os03g02830
Os.23229.1.S1_at--353--7431Chr03:1081311..1081335 (25 bp)
GTGTTTGTGATAGCCCGATAGGTCC
LOC_Os03g02830
Os.23229.1.S1_at--1051--3451Chr03:1081264..1081288 (25 bp)
CAGTGTACTCTGTTGACTCCAATTT
LOC_Os03g02830
Target Sequence 
TGTTTGGATGAGAACCGCTGCCCTCCCAACTTTCAGAAAGCTTTATGGCAGAATCGAGACAGATATTATGGCAAATGATC
AATTAACAGTGGTTATACAGAATAACTATAACACATATAGTTTTGGAGGGTCTAAAGCGTTGGTCCTTTCAACTACTTCT
TGGATTGGAGGCAAAAACAACTTCATTGGTGTTGCATATCTGACTATCGGAGGCCTATGCATTTTCCTTGCAGTGGGCTT
NGTAGTNCTTCTCTACATGGTTAAACCAAGGACTCTTGGAGACCCCTCGTACTTGTCATGGAATAGAGATACTCCAGACC
GTCCAAACTAATAGATTGGAATCTCTTTTCTGATATATAAATTTAATAAAGGATCATTTCAATGGGTAAAATGTGAAATT
CCTTTACCTGAATCTATGGATGATGTTATGATTCCTATCTAACGTGTTTGTGATAGCCCGATAGGTCCATAGGCATGAGA
ATACATGAGACAGTGTACTCTGTTGACTCCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis