Browse Element(s) Details


Os.26571.1.S1_at

Description gb:AK066854.1
DB_XREF= gi:32976872
TID=Os.26571.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative transmembrane protein (OJ1263H11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075C10, full insert sequence.
FL= gb:AK066854.1 gb:AK104882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0285010/11tobamovirus multiplication protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02850Os.26571.1.S1_at10/113+1098132..1102122tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g02860Os.20163.1.S1_at11/113+1103313..1105401copper chaperone, putative, expressed
LOC_Os03g02870NANA3+1110205..1111709hypothetical protein
LOC_Os03g02890Os.54021.1.S1_at11/113+1115474..1119407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046786biological_processviral replication complex formation and maintenance
GO:0005774cellular_componentvacuolar membrane
GO:0005515molecular_functionprotein binding
GO:0046790molecular_functionvirion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26571.1.S1_at--434--1451Chr03:1099329..1099353 (25 bp)
AGAAGCCGATCTTGATGTTCTGAAC
LOC_Os03g02850
Os.26571.1.S1_at--364--10571Chr03:1099312..1099336 (25 bp)
TTCTGAACCATCCAATCCTAAACTT
LOC_Os03g02850
Os.26571.1.S1_at--801--2051NONE
ACTTCTTCTACTACTTGTTGGTTGA
NONE
Os.26571.1.S1_at--252--1191Chr03:1098462..1098486 (25 bp)
AGTACCATCCAATCCATTAGATCAG
LOC_Os03g02850
Os.26571.1.S1_at--588--10451Chr03:1098446..1098470 (25 bp)
TTAGATCAGTCCAGGGATCCCCAAT
LOC_Os03g02850
Os.26571.1.S1_at--699--6371Chr03:1098431..1098455 (25 bp)
GATCCCCAATGTGCCCTTGCAAATT
LOC_Os03g02850
Os.26571.1.S1_at--447--3171Chr03:1098410..1098434 (25 bp)
AATTGTTCCTTCAAACTGGTGAGTA
LOC_Os03g02850
Os.26571.1.S1_at--412--7851Chr03:1098350..1098374 (25 bp)
GGTAGGTTGCTTGGTTTTCATGTGA
LOC_Os03g02850
Os.26571.1.S1_at--773--9811Chr03:1098287..1098311 (25 bp)
TAAAAAGTCTAACATCCCGTCATCC
LOC_Os03g02850
Os.26571.1.S1_at--195--9011Chr03:1098254..1098278 (25 bp)
TGCAATTGCTGTACTGCGACCCAGG
LOC_Os03g02850
Os.26571.1.S1_at--174--4611Chr03:1098239..1098263 (25 bp)
GCGACCCAGGAGTATTCTGCAACTA
LOC_Os03g02850
Target Sequence 
AGAAGCCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGTTGGTTGAGATTGTACCTTCAGCTT
TGGTGCTGTTCATATTAAGGAAACTACCACCTAAACGGGGGATCACACAGTACCATCCAATCCATTAGATCAGTCCAGGG
ATCCCCAATGTGCCCTTGCAAATTGTTCCTTCAAACTGGTGAGTACAGAAATGTAAATCTTAACCACGGATTTCTTTGTA
GGTAGGTTGCTTGGTTTTCATGTGAAAAAAGCTCAACAAAAATTCTGGGATATATATAGTTTGTAAAAAGTCTAACATCC
CGTCATCCCAAATTCCTGCAATTGCTGTACTGCGACCCAGGAGTATTCTGCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis