Browse Element(s) Details


Os.20163.1.S1_at

Description gb:AK070517.1
DB_XREF= gi:32980541
TID=Os.20163.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1263H11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056A13, full insert sequence.
FL= gb:AK070517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0286011/11copper chaperone, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02850Os.26571.1.S1_at10/113+1098132..1102122tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g02860Os.20163.1.S1_at11/113+1103313..1105401copper chaperone, putative, expressed
LOC_Os03g02870NANA3+1110205..1111709hypothetical protein
LOC_Os03g02890Os.54021.1.S1_at11/113+1115474..1119407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0030001biological_processmetal ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20163.1.S1_at--236--2871Chr03:1103858..1103882 (25 bp)
AAGGCGGAGTTCTGGCCAAACCCAG
LOC_Os03g02860
Os.20163.1.S1_at--154--9531Chr03:1103824..1103848 (25 bp)
TCTACTTCACGTCGGCCAAGGACTA
LOC_Os03g02860
Os.20163.1.S1_at--565--3711Chr03:1103595..1103619 (25 bp)
CTAGTAGCAGTGAGATCGATCGAGT
LOC_Os03g02860
Os.20163.1.S1_at--245--7411Chr03:1103566..1103590 (25 bp)
GTGATCATCATTGTGTGTTCTCTCT
LOC_Os03g02860
Os.20163.1.S1_at--1144--10831Chr03:1103556..1103580 (25 bp)
TTGTGTGTTCTCTCTTGTGCTCGGC
LOC_Os03g02860
Os.20163.1.S1_at--277--2311Chr03:1103469..1103493 (25 bp)
AAAGTCAGTCAGTCAGTGTGGCAAT
LOC_Os03g02860
Os.20163.1.S1_at--498--531Chr03:1103444..1103468 (25 bp)
ATCGAATGAGTAGTGGCGCCCTTTA
LOC_Os03g02860
Os.20163.1.S1_at--570--11Chr03:1103422..1103446 (25 bp)
TTACGGGTTACACAATGGAAAGCCA
LOC_Os03g02860
Os.20163.1.S1_at--826--2651Chr03:1103403..1103427 (25 bp)
AAGCCAGGCTCTGTGTACGTACGTA
LOC_Os03g02860
Os.20163.1.S1_at--448--7011Chr03:1103381..1103405 (25 bp)
GTACTCTCTGTCGATCTGCAAATTG
LOC_Os03g02860
Os.20163.1.S1_at--542--4111Chr03:1103364..1103388 (25 bp)
GCAAATTGTCAATGGGCCCGAAACT
LOC_Os03g02860
Target Sequence 
AAGGCGGAGTTCTGGCCAAACCCAGACCTGCCGCTCTACTTCACGTCGGCCAAGGACTACTTCCACGACGAGGAGTCCTT
CCGCCCCAGCTACAACTACTACCGCCACGGCTACAACGGCGACAAGCACGGCCACCTCCCGGAGCCCCACCGCGGNCGCC
GACCCCGTCAGCAACCTCTTCAACGACGACGACGTCAACGCCTGCTCCATCATGTAAAAAAATTCCCATGCCCGCCTCGC
ATTGCACGCGTACTACTACTACTACTAGTAGCAGTGAGATCGATCGAGTGTGTGTGATCATCATTGTGTGTTCTCTCTTG
TGCTCGGCGCCGTGGTGACAGGTCAGGTAGTGTGCTGTGTGTCCATGGAGTAGTAGTAGTAGCAGATGCTAAAGTCAGTC
AGTCAGTGTGGCAATATCGAATGAGTAGTGGCGCCCTTTACGGGTTACACAATGGAAAGCCAGGCTCTGTGTACGTACGT
ACTCTCTGTCGATCTGCAAATTGTCAATGGGCCCGAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis